Hb_000317_440

Information

Type -
Description -
Location Contig317: 296387-313296
Sequence    

Annotation

kegg
ID pop:POPTR_0004s14340g
description POPTRDRAFT_800697; hypothetical protein
nr
ID XP_012088398.1
description PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25883 PE=4 SV=1
Gene Ontology
ID GO:0016853
description peptidyl-prolyl cis-trans isomerase g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33415: 297454-313252 , PASA_asmbl_33416: 297470-312849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_440 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
2 Hb_000631_150 0.0523728703 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
3 Hb_001437_100 0.0561099515 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
4 Hb_000136_150 0.0561386036 - - hypothetical protein VITISV_038366 [Vitis vinifera]
5 Hb_002883_010 0.0578316173 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
6 Hb_016657_020 0.0695716326 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
7 Hb_153547_010 0.0709640979 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
8 Hb_000003_790 0.0718336929 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
9 Hb_031754_010 0.0720754282 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
10 Hb_000134_360 0.0731312503 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_000335_010 0.0746208372 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000318_140 0.0752273868 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
13 Hb_117950_020 0.0770794674 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
14 Hb_001486_120 0.0771302579 - - PREDICTED: importin-5-like [Jatropha curcas]
15 Hb_002043_170 0.0772602253 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
16 Hb_000230_370 0.0797138332 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
17 Hb_007407_040 0.0798793915 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_005295_040 0.0810859194 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
19 Hb_000076_080 0.0823818143 - - PREDICTED: protein MOS2 [Jatropha curcas]
20 Hb_002820_040 0.0839313234 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000317_440 Hb_000317_440 Hb_000631_150 Hb_000631_150 Hb_000317_440--Hb_000631_150 Hb_001437_100 Hb_001437_100 Hb_000317_440--Hb_001437_100 Hb_000136_150 Hb_000136_150 Hb_000317_440--Hb_000136_150 Hb_002883_010 Hb_002883_010 Hb_000317_440--Hb_002883_010 Hb_016657_020 Hb_016657_020 Hb_000317_440--Hb_016657_020 Hb_153547_010 Hb_153547_010 Hb_000317_440--Hb_153547_010 Hb_000134_360 Hb_000134_360 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_000318_140 Hb_000318_140 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_002043_170 Hb_002043_170 Hb_001437_100--Hb_002043_170 Hb_001437_100--Hb_002883_010 Hb_000300_580 Hb_000300_580 Hb_001437_100--Hb_000300_580 Hb_000335_010 Hb_000335_010 Hb_001437_100--Hb_000335_010 Hb_000096_180 Hb_000096_180 Hb_001437_100--Hb_000096_180 Hb_001486_120 Hb_001486_120 Hb_000136_150--Hb_001486_120 Hb_000136_150--Hb_016657_020 Hb_000136_150--Hb_001437_100 Hb_000136_150--Hb_002883_010 Hb_000805_310 Hb_000805_310 Hb_000136_150--Hb_000805_310 Hb_002883_010--Hb_002043_170 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_117950_020 Hb_117950_020 Hb_016657_020--Hb_117950_020 Hb_000003_790 Hb_000003_790 Hb_016657_020--Hb_000003_790 Hb_016657_020--Hb_000631_150 Hb_016657_020--Hb_001486_120 Hb_153547_010--Hb_117950_020 Hb_153547_010--Hb_000631_150 Hb_004724_360 Hb_004724_360 Hb_153547_010--Hb_004724_360 Hb_005295_040 Hb_005295_040 Hb_153547_010--Hb_005295_040 Hb_153547_010--Hb_000318_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
145.418 57.9654 23.1778 20.4366 172.853 199.044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.6172 33.7196 59.0549 64.0129 42.027

CAGE analysis