Hb_000805_310

Information

Type -
Description -
Location Contig805: 280344-282785
Sequence    

Annotation

kegg
ID vvi:100244620
description pentatricopeptide repeat-containing protein At1g09900
nr
ID XP_012092557.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
swissprot
ID Q9LFF1
description Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
trembl
ID A0A067JKB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59002: 278502-280638 , PASA_asmbl_59003: 280940-281114 , PASA_asmbl_59004: 282063-282448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_310 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
2 Hb_001486_120 0.0752774544 - - PREDICTED: importin-5-like [Jatropha curcas]
3 Hb_005295_040 0.0767067598 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
4 Hb_000136_150 0.0819752512 - - hypothetical protein VITISV_038366 [Vitis vinifera]
5 Hb_153547_010 0.0819777381 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
6 Hb_000230_370 0.0835979149 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
7 Hb_005129_050 0.0844456142 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
8 Hb_004724_360 0.08636629 - - OTU-like cysteine protease family protein [Populus trichocarpa]
9 Hb_005000_270 0.0868197521 - - unnamed protein product [Vitis vinifera]
10 Hb_022288_010 0.0887731686 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
11 Hb_000317_440 0.0888906088 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
12 Hb_000212_280 0.0890181794 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
13 Hb_012016_020 0.090145027 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
14 Hb_000291_120 0.0915697247 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
15 Hb_001623_550 0.0920313505 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
16 Hb_001871_040 0.0921180129 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
17 Hb_000035_400 0.0929400606 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
18 Hb_000076_080 0.095398911 - - PREDICTED: protein MOS2 [Jatropha curcas]
19 Hb_008528_010 0.0956059621 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
20 Hb_000134_360 0.0964637773 - - PREDICTED: protein gar2 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_310 Hb_000805_310 Hb_001486_120 Hb_001486_120 Hb_000805_310--Hb_001486_120 Hb_005295_040 Hb_005295_040 Hb_000805_310--Hb_005295_040 Hb_000136_150 Hb_000136_150 Hb_000805_310--Hb_000136_150 Hb_153547_010 Hb_153547_010 Hb_000805_310--Hb_153547_010 Hb_000230_370 Hb_000230_370 Hb_000805_310--Hb_000230_370 Hb_005129_050 Hb_005129_050 Hb_000805_310--Hb_005129_050 Hb_001486_120--Hb_000136_150 Hb_000134_360 Hb_000134_360 Hb_001486_120--Hb_000134_360 Hb_000317_440 Hb_000317_440 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_008528_010 Hb_008528_010 Hb_001486_120--Hb_008528_010 Hb_004724_360 Hb_004724_360 Hb_005295_040--Hb_004724_360 Hb_002725_070 Hb_002725_070 Hb_005295_040--Hb_002725_070 Hb_001975_020 Hb_001975_020 Hb_005295_040--Hb_001975_020 Hb_000367_290 Hb_000367_290 Hb_005295_040--Hb_000367_290 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310 Hb_000136_150--Hb_000317_440 Hb_016657_020 Hb_016657_020 Hb_000136_150--Hb_016657_020 Hb_001437_100 Hb_001437_100 Hb_000136_150--Hb_001437_100 Hb_002883_010 Hb_002883_010 Hb_000136_150--Hb_002883_010 Hb_117950_020 Hb_117950_020 Hb_153547_010--Hb_117950_020 Hb_153547_010--Hb_000317_440 Hb_000631_150 Hb_000631_150 Hb_153547_010--Hb_000631_150 Hb_153547_010--Hb_004724_360 Hb_153547_010--Hb_005295_040 Hb_000318_140 Hb_000318_140 Hb_153547_010--Hb_000318_140 Hb_046615_020 Hb_046615_020 Hb_000230_370--Hb_046615_020 Hb_000230_370--Hb_000327_310 Hb_001301_210 Hb_001301_210 Hb_000230_370--Hb_001301_210 Hb_000230_370--Hb_002883_010 Hb_000230_370--Hb_001975_020 Hb_000230_370--Hb_000318_140 Hb_005129_050--Hb_001301_210 Hb_001278_060 Hb_001278_060 Hb_005129_050--Hb_001278_060 Hb_005129_050--Hb_002883_010 Hb_001433_190 Hb_001433_190 Hb_005129_050--Hb_001433_190 Hb_007668_020 Hb_007668_020 Hb_005129_050--Hb_007668_020 Hb_001196_070 Hb_001196_070 Hb_005129_050--Hb_001196_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.541 4.07648 1.02203 1.16616 10.1301 15.8632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.69748 2.80964 4.21221 3.63663 2.18156

CAGE analysis