Hb_000136_150

Information

Type -
Description -
Location Contig136: 120578-124352
Sequence    

Annotation

kegg
ID atr:s00019p00256050
description AMTR_s00019p00256050; hypothetical protein
nr
ID CAN81874.1
description hypothetical protein VITISV_038366 [Vitis vinifera]
swissprot
ID Q9XHM1
description Eukaryotic translation initiation factor 3 subunit C OS=Medicago truncatula GN=TIF3C1 PE=2 SV=1
trembl
ID A5C628
description Eukaryotic translation initiation factor 3 subunit C OS=Vitis vinifera GN=VITISV_038366 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10003: 120677-125025 , PASA_asmbl_10004: 120677-125025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_150 0.0 - - hypothetical protein VITISV_038366 [Vitis vinifera]
2 Hb_000317_440 0.0561386036 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
3 Hb_001486_120 0.0652138681 - - PREDICTED: importin-5-like [Jatropha curcas]
4 Hb_016657_020 0.0774965974 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
5 Hb_001437_100 0.078603072 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
6 Hb_002883_010 0.0808608811 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
7 Hb_000805_310 0.0819752512 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
8 Hb_005129_050 0.0838282731 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
9 Hb_001433_190 0.0846064078 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
10 Hb_063047_010 0.0851796035 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
11 Hb_001871_040 0.0853835785 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
12 Hb_001609_010 0.0868854355 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
13 Hb_000631_150 0.0868924699 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
14 Hb_000134_360 0.0871107542 - - PREDICTED: protein gar2 [Jatropha curcas]
15 Hb_005295_040 0.0885562044 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
16 Hb_042487_010 0.0897045788 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
17 Hb_000300_580 0.0905102014 - - PREDICTED: importin-5-like [Jatropha curcas]
18 Hb_000003_790 0.0906085026 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
19 Hb_004037_030 0.0913766666 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
20 Hb_005635_010 0.091394642 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000136_150 Hb_000136_150 Hb_000317_440 Hb_000317_440 Hb_000136_150--Hb_000317_440 Hb_001486_120 Hb_001486_120 Hb_000136_150--Hb_001486_120 Hb_016657_020 Hb_016657_020 Hb_000136_150--Hb_016657_020 Hb_001437_100 Hb_001437_100 Hb_000136_150--Hb_001437_100 Hb_002883_010 Hb_002883_010 Hb_000136_150--Hb_002883_010 Hb_000805_310 Hb_000805_310 Hb_000136_150--Hb_000805_310 Hb_000631_150 Hb_000631_150 Hb_000317_440--Hb_000631_150 Hb_000317_440--Hb_001437_100 Hb_000317_440--Hb_002883_010 Hb_000317_440--Hb_016657_020 Hb_153547_010 Hb_153547_010 Hb_000317_440--Hb_153547_010 Hb_000134_360 Hb_000134_360 Hb_001486_120--Hb_000134_360 Hb_001486_120--Hb_000805_310 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_008528_010 Hb_008528_010 Hb_001486_120--Hb_008528_010 Hb_117950_020 Hb_117950_020 Hb_016657_020--Hb_117950_020 Hb_000003_790 Hb_000003_790 Hb_016657_020--Hb_000003_790 Hb_016657_020--Hb_000631_150 Hb_016657_020--Hb_001486_120 Hb_002043_170 Hb_002043_170 Hb_001437_100--Hb_002043_170 Hb_001437_100--Hb_002883_010 Hb_000300_580 Hb_000300_580 Hb_001437_100--Hb_000300_580 Hb_000335_010 Hb_000335_010 Hb_001437_100--Hb_000335_010 Hb_000096_180 Hb_000096_180 Hb_001437_100--Hb_000096_180 Hb_002883_010--Hb_002043_170 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_005295_040 Hb_005295_040 Hb_000805_310--Hb_005295_040 Hb_000805_310--Hb_153547_010 Hb_000230_370 Hb_000230_370 Hb_000805_310--Hb_000230_370 Hb_005129_050 Hb_005129_050 Hb_000805_310--Hb_005129_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
141.66 64.1662 17.1286 26.711 162.907 243.097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.1406 27.1946 61.6024 71.1775 47.0132

CAGE analysis