Hb_000849_100

Information

Type -
Description -
Location Contig849: 128122-145255
Sequence    

Annotation

kegg
ID rcu:RCOM_1627240
description fad oxidoreductase, putative (EC:1.4.99.1)
nr
ID XP_012084797.1
description PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
swissprot
ID A4WBF2
description D-amino acid dehydrogenase OS=Enterobacter sp. (strain 638) GN=dadA PE=3 SV=1
trembl
ID A0A067LLL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15104 PE=4 SV=1
Gene Ontology
ID GO:0016491
description d-amino acid dehydrogenase small subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60296: 128160-144008 , PASA_asmbl_60299: 140652-140983 , PASA_asmbl_60302: 130966-131166
cDNA
(Sanger)
(ID:Location)		 017_N17.ab1: 128160-129047

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_100 0.0 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
2 Hb_000631_150 0.0602862145 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
3 Hb_000134_360 0.0725959292 - - PREDICTED: protein gar2 [Jatropha curcas]
4 Hb_006002_030 0.0748729552 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
5 Hb_003716_020 0.077539327 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
6 Hb_002725_070 0.0786411387 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
7 Hb_002235_320 0.0793195581 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
8 Hb_000116_170 0.0811031568 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
9 Hb_000165_130 0.081357927 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
10 Hb_002675_060 0.0830652077 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
11 Hb_031754_010 0.0830804571 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
12 Hb_000318_140 0.0834851043 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
13 Hb_000003_790 0.083801449 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
14 Hb_023020_060 0.085316006 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
15 Hb_002493_090 0.0873712602 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
16 Hb_000613_100 0.0878764055 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
17 Hb_002883_010 0.0879523593 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
18 Hb_000213_070 0.0888359617 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
19 Hb_000335_010 0.08911053 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_079326_010 0.0893777365 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000849_100 Hb_000849_100 Hb_000631_150 Hb_000631_150 Hb_000849_100--Hb_000631_150 Hb_000134_360 Hb_000134_360 Hb_000849_100--Hb_000134_360 Hb_006002_030 Hb_006002_030 Hb_000849_100--Hb_006002_030 Hb_003716_020 Hb_003716_020 Hb_000849_100--Hb_003716_020 Hb_002725_070 Hb_002725_070 Hb_000849_100--Hb_002725_070 Hb_002235_320 Hb_002235_320 Hb_000849_100--Hb_002235_320 Hb_000317_440 Hb_000317_440 Hb_000631_150--Hb_000317_440 Hb_000631_150--Hb_000134_360 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_000318_140 Hb_000318_140 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_008528_010 Hb_008528_010 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_078477_040 Hb_078477_040 Hb_006002_030--Hb_078477_040 Hb_001278_060 Hb_001278_060 Hb_006002_030--Hb_001278_060 Hb_006829_090 Hb_006829_090 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_006002_030--Hb_002235_320 Hb_011497_010 Hb_011497_010 Hb_003716_020--Hb_011497_010 Hb_007668_020 Hb_007668_020 Hb_003716_020--Hb_007668_020 Hb_003581_020 Hb_003581_020 Hb_003716_020--Hb_003581_020 Hb_003716_020--Hb_005000_270 Hb_003716_020--Hb_006002_030 Hb_005295_040 Hb_005295_040 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002820_040 Hb_002820_040 Hb_002725_070--Hb_002820_040 Hb_000078_100 Hb_000078_100 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_004225_130 Hb_004225_130 Hb_002235_320--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002235_320--Hb_002883_010 Hb_000239_070 Hb_000239_070 Hb_002235_320--Hb_000239_070 Hb_007416_310 Hb_007416_310 Hb_002235_320--Hb_007416_310 Hb_001019_170 Hb_001019_170 Hb_002235_320--Hb_001019_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.9915 7.5734 3.35734 5.79999 25.1566 23.2678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5178 4.17801 5.82705 6.82573 2.65772

CAGE analysis