Hb_007416_310

Information

Type -
Description -
Location Contig7416: 198842-201517
Sequence    

Annotation

kegg
ID rcu:RCOM_0204840
description transcription factor, putative
nr
ID XP_012076333.1
description PREDICTED: zinc finger protein 622 [Jatropha curcas]
swissprot
ID O59811
description Cytoplasmic 60S subunit biogenesis factor SPCC550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1
trembl
ID A0A067KBC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07013 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein 622-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56450: 198807-201498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_310 0.0 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
2 Hb_002820_040 0.0728127816 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002235_320 0.0737774796 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
4 Hb_001019_170 0.0782706834 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
5 Hb_002652_040 0.0840330527 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
6 Hb_002725_070 0.0853918071 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
7 Hb_000331_190 0.085607599 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
8 Hb_024990_010 0.0857071269 - - PREDICTED: la protein 1 [Jatropha curcas]
9 Hb_000424_010 0.0859781692 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
10 Hb_002883_010 0.0861161767 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
11 Hb_023001_020 0.0869870526 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
12 Hb_000327_310 0.0893279483 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
13 Hb_000035_040 0.091303501 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
14 Hb_000139_250 0.0942724238 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
15 Hb_000333_100 0.0953583478 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
16 Hb_004225_130 0.0958125621 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
17 Hb_175338_020 0.0963241955 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
18 Hb_000236_320 0.0963936691 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
19 Hb_001504_160 0.0975072024 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
20 Hb_031754_010 0.0977622382 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007416_310 Hb_007416_310 Hb_002820_040 Hb_002820_040 Hb_007416_310--Hb_002820_040 Hb_002235_320 Hb_002235_320 Hb_007416_310--Hb_002235_320 Hb_001019_170 Hb_001019_170 Hb_007416_310--Hb_001019_170 Hb_002652_040 Hb_002652_040 Hb_007416_310--Hb_002652_040 Hb_002725_070 Hb_002725_070 Hb_007416_310--Hb_002725_070 Hb_000331_190 Hb_000331_190 Hb_007416_310--Hb_000331_190 Hb_000318_140 Hb_000318_140 Hb_002820_040--Hb_000318_140 Hb_002820_040--Hb_002725_070 Hb_006913_040 Hb_006913_040 Hb_002820_040--Hb_006913_040 Hb_000078_100 Hb_000078_100 Hb_002820_040--Hb_000078_100 Hb_000645_150 Hb_000645_150 Hb_002820_040--Hb_000645_150 Hb_004225_130 Hb_004225_130 Hb_002235_320--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002235_320--Hb_002883_010 Hb_000239_070 Hb_000239_070 Hb_002235_320--Hb_000239_070 Hb_006002_030 Hb_006002_030 Hb_002235_320--Hb_006002_030 Hb_002235_320--Hb_001019_170 Hb_008714_020 Hb_008714_020 Hb_001019_170--Hb_008714_020 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080 Hb_001019_170--Hb_006913_040 Hb_000035_040 Hb_000035_040 Hb_002652_040--Hb_000035_040 Hb_002652_040--Hb_000331_190 Hb_000424_010 Hb_000424_010 Hb_002652_040--Hb_000424_010 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_002652_040--Hb_002883_010 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020 Hb_005295_040 Hb_005295_040 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_000331_190--Hb_125092_020 Hb_024990_010 Hb_024990_010 Hb_000331_190--Hb_024990_010 Hb_000331_190--Hb_000035_040 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.0607 50.9382 31.0946 13.0976 98.4237 111.181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.1305 23.6893 36.5245 43.4078 14.8912

CAGE analysis