Hb_002675_060

Information

Type -
Description -
Location Contig2675: 35245-54730
Sequence    

Annotation

kegg
ID rcu:RCOM_1593860
description hypothetical protein
nr
ID XP_012073311.1
description PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06245 PE=4 SV=1
Gene Ontology
ID GO:0016757
description alpha- -mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27851: 35155-54618 , PASA_asmbl_27852: 40896-41274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_060 0.0 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
2 Hb_001221_040 0.0722681324 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
3 Hb_000213_070 0.0727063722 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
4 Hb_000035_040 0.0731943865 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
5 Hb_002652_040 0.0738531871 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
6 Hb_002942_080 0.0757519759 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
7 Hb_000331_190 0.0792659716 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
8 Hb_031754_010 0.0796751025 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
9 Hb_000335_010 0.0820732779 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_005214_060 0.08208785 - - catalytic, putative [Ricinus communis]
11 Hb_000849_100 0.0830652077 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
12 Hb_021409_170 0.0841892105 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
13 Hb_125092_020 0.0865712224 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
14 Hb_002883_010 0.0876134683 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
15 Hb_024990_010 0.0882635776 - - PREDICTED: la protein 1 [Jatropha curcas]
16 Hb_000531_090 0.0888172771 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
17 Hb_000116_170 0.0888981095 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
18 Hb_000789_080 0.0901519993 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
19 Hb_022250_110 0.091745477 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
20 Hb_000631_150 0.0925363161 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_060 Hb_002675_060 Hb_001221_040 Hb_001221_040 Hb_002675_060--Hb_001221_040 Hb_000213_070 Hb_000213_070 Hb_002675_060--Hb_000213_070 Hb_000035_040 Hb_000035_040 Hb_002675_060--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_002675_060--Hb_002652_040 Hb_002942_080 Hb_002942_080 Hb_002675_060--Hb_002942_080 Hb_000331_190 Hb_000331_190 Hb_002675_060--Hb_000331_190 Hb_021409_170 Hb_021409_170 Hb_001221_040--Hb_021409_170 Hb_026099_010 Hb_026099_010 Hb_001221_040--Hb_026099_010 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_000046_440 Hb_000046_440 Hb_001221_040--Hb_000046_440 Hb_001278_060 Hb_001278_060 Hb_000213_070--Hb_001278_060 Hb_006002_030 Hb_006002_030 Hb_000213_070--Hb_006002_030 Hb_000213_070--Hb_000331_190 Hb_007668_020 Hb_007668_020 Hb_000213_070--Hb_007668_020 Hb_078477_040 Hb_078477_040 Hb_000213_070--Hb_078477_040 Hb_000035_040--Hb_002652_040 Hb_000424_010 Hb_000424_010 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000035_040--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_002652_040--Hb_000331_190 Hb_002652_040--Hb_000424_010 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020 Hb_007668_040 Hb_007668_040 Hb_002942_080--Hb_007668_040 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_003006_060 Hb_003006_060 Hb_002942_080--Hb_003006_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_002942_080--Hb_024990_010 Hb_000331_190--Hb_125092_020 Hb_000331_190--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.2208 15.5284 13.1495 12.8779 49.1137 47.4737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5506 8.89447 13.2613 24.9612 7.79025

CAGE analysis