Hb_009913_050

Information

Type -
Description -
Location Contig9913: 48455-53701
Sequence    

Annotation

kegg
ID rcu:RCOM_1411970
description protein with unknown function
nr
ID XP_012065663.1
description PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
swissprot
ID Q6PH11
description Partner of Y14 and mago OS=Danio rerio GN=wibg PE=2 SV=1
trembl
ID A0A067L8S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16920 PE=4 SV=1
Gene Ontology
ID GO:0005654
description partner of y14 and mago

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64787: 48778-53623 , PASA_asmbl_64788: 51363-51644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009913_050 0.0 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
2 Hb_005214_060 0.064654391 - - catalytic, putative [Ricinus communis]
3 Hb_002942_080 0.0647225173 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
4 Hb_000318_140 0.0744009757 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
5 Hb_001396_290 0.0780310659 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
6 Hb_002048_090 0.0797689719 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
7 Hb_025557_020 0.081413625 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
8 Hb_007668_020 0.0833722385 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
9 Hb_023020_060 0.0858176941 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
10 Hb_164010_020 0.087009992 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
11 Hb_007668_040 0.0891118025 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
12 Hb_000181_310 0.0917181008 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
13 Hb_000849_100 0.0918861273 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
14 Hb_002411_180 0.0924858613 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
15 Hb_073171_080 0.093152574 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
16 Hb_007757_100 0.0940612522 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
17 Hb_002883_010 0.0942957958 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
18 Hb_002675_060 0.0943470852 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
19 Hb_004374_150 0.09460288 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
20 Hb_000213_070 0.0952501273 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009913_050 Hb_009913_050 Hb_005214_060 Hb_005214_060 Hb_009913_050--Hb_005214_060 Hb_002942_080 Hb_002942_080 Hb_009913_050--Hb_002942_080 Hb_000318_140 Hb_000318_140 Hb_009913_050--Hb_000318_140 Hb_001396_290 Hb_001396_290 Hb_009913_050--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_009913_050--Hb_002048_090 Hb_025557_020 Hb_025557_020 Hb_009913_050--Hb_025557_020 Hb_005214_060--Hb_002942_080 Hb_002675_060 Hb_002675_060 Hb_005214_060--Hb_002675_060 Hb_000213_070 Hb_000213_070 Hb_005214_060--Hb_000213_070 Hb_000331_190 Hb_000331_190 Hb_005214_060--Hb_000331_190 Hb_024990_010 Hb_024990_010 Hb_005214_060--Hb_024990_010 Hb_007668_040 Hb_007668_040 Hb_002942_080--Hb_007668_040 Hb_003006_060 Hb_003006_060 Hb_002942_080--Hb_003006_060 Hb_002942_080--Hb_002675_060 Hb_002942_080--Hb_024990_010 Hb_000318_140--Hb_025557_020 Hb_002820_040 Hb_002820_040 Hb_000318_140--Hb_002820_040 Hb_018663_020 Hb_018663_020 Hb_000318_140--Hb_018663_020 Hb_000631_150 Hb_000631_150 Hb_000318_140--Hb_000631_150 Hb_000035_400 Hb_000035_400 Hb_000318_140--Hb_000035_400 Hb_009615_110 Hb_009615_110 Hb_000318_140--Hb_009615_110 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_006829_090 Hb_006829_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_002048_090--Hb_073171_080 Hb_000244_240 Hb_000244_240 Hb_002048_090--Hb_000244_240 Hb_002048_090--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002048_090--Hb_002883_010 Hb_164010_020 Hb_164010_020 Hb_025557_020--Hb_164010_020 Hb_025557_020--Hb_000631_150 Hb_025557_020--Hb_018663_020 Hb_000116_170 Hb_000116_170 Hb_025557_020--Hb_000116_170 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.9306 13.6212 11.8235 7.56822 42.7216 43.1645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.732 9.10079 5.50173 12.0157 6.74331

CAGE analysis