Hb_000120_610

Information

Type -
Description -
Location Contig120: 468453-479383
Sequence    

Annotation

kegg
ID rcu:RCOM_0875030
description mitotic control protein dis3, putative (EC:3.1.13.1)
nr
ID XP_002521738.1
description mitotic control protein dis3, putative [Ricinus communis]
swissprot
ID Q9CSH3
description Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
trembl
ID B9S6W9
description Mitotic control protein dis3, putative OS=Ricinus communis GN=RCOM_0875030 PE=3 SV=1
Gene Ontology
ID GO:0008859
description exosome complex exonuclease rrp44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06161: 468480-478408 , PASA_asmbl_06163: 474193-474554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_610 0.0 - - mitotic control protein dis3, putative [Ricinus communis]
2 Hb_000264_100 0.048414288 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000594_020 0.0530198454 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
4 Hb_002659_060 0.0595052689 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
5 Hb_140049_020 0.0714540545 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
6 Hb_004899_070 0.0735541983 - - PREDICTED: RRP12-like protein [Jatropha curcas]
7 Hb_004970_160 0.0740231226 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
8 Hb_000136_090 0.0740986477 - - programmed cell death protein, putative [Ricinus communis]
9 Hb_001221_150 0.0757608441 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
10 Hb_000032_010 0.0765096964 - - crooked neck protein, putative [Ricinus communis]
11 Hb_019153_020 0.0765831545 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
12 Hb_000813_100 0.0775098996 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
13 Hb_000529_260 0.0778800798 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
14 Hb_002163_010 0.0781077162 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
15 Hb_000997_030 0.0783731785 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
16 Hb_001028_070 0.0785720467 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
17 Hb_033883_060 0.0796387512 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
18 Hb_000098_130 0.0796425725 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
19 Hb_003299_070 0.0812470618 - - AMP deaminase [Theobroma cacao]
20 Hb_004659_080 0.0813143663 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_610 Hb_000120_610 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000594_020 Hb_000594_020 Hb_000120_610--Hb_000594_020 Hb_002659_060 Hb_002659_060 Hb_000120_610--Hb_002659_060 Hb_140049_020 Hb_140049_020 Hb_000120_610--Hb_140049_020 Hb_004899_070 Hb_004899_070 Hb_000120_610--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_610--Hb_004970_160 Hb_000997_030 Hb_000997_030 Hb_000264_100--Hb_000997_030 Hb_030565_090 Hb_030565_090 Hb_000264_100--Hb_030565_090 Hb_000264_100--Hb_140049_020 Hb_000264_100--Hb_000594_020 Hb_000264_100--Hb_004899_070 Hb_000813_100 Hb_000813_100 Hb_000594_020--Hb_000813_100 Hb_000594_020--Hb_002659_060 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_000594_020--Hb_004970_160 Hb_000504_160 Hb_000504_160 Hb_002659_060--Hb_000504_160 Hb_004920_130 Hb_004920_130 Hb_002659_060--Hb_004920_130 Hb_033883_060 Hb_033883_060 Hb_002659_060--Hb_033883_060 Hb_004635_050 Hb_004635_050 Hb_002659_060--Hb_004635_050 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_004899_070--Hb_000813_100 Hb_004970_160--Hb_000120_620 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6607 38.154 13.0916 12.2512 46.3116 38.5757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3269 11.0642 11.4178 26.9979 12.5765

CAGE analysis