Hb_000594_020

Information

Type -
Description -
Location Contig594: 10720-31960
Sequence    

Annotation

kegg
ID tcc:TCM_011854
description Phytochrome and flowering time regulatory protein isoform 1
nr
ID XP_012082045.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
swissprot
ID Q7XYY2
description Mediator of RNA polymerase II transcription subunit 25 OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
trembl
ID A0A061EIJ9
description Phytochrome and flowering time regulatory protein isoform 2 OS=Theobroma cacao GN=TCM_011854 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 25 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50321: 10631-11186 , PASA_asmbl_50322: 10847-12928 , PASA_asmbl_50323: 12929-24366 , PASA_asmbl_50324: 24367-30615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_020 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
2 Hb_000120_610 0.0530198454 - - mitotic control protein dis3, putative [Ricinus communis]
3 Hb_000813_100 0.0579803179 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
4 Hb_002659_060 0.0633578515 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
5 Hb_004899_070 0.0678372251 - - PREDICTED: RRP12-like protein [Jatropha curcas]
6 Hb_002411_120 0.0702008782 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
7 Hb_004970_160 0.0713961271 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
8 Hb_000002_440 0.0727966186 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
9 Hb_000227_380 0.074518545 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
10 Hb_000264_100 0.0753305908 - - conserved hypothetical protein [Ricinus communis]
11 Hb_147737_010 0.076142236 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
12 Hb_000997_030 0.0782914012 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
13 Hb_000424_010 0.078686566 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
14 Hb_000529_260 0.0788537527 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
15 Hb_002235_320 0.0793167328 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
16 Hb_001417_050 0.0795499184 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
17 Hb_010315_090 0.0816545675 - - suppressor of ty, putative [Ricinus communis]
18 Hb_001028_070 0.0824412802 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
19 Hb_000331_190 0.0829032739 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
20 Hb_003299_070 0.0829574374 - - AMP deaminase [Theobroma cacao]

Gene co-expression network

sample Hb_000594_020 Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_000594_020--Hb_000120_610 Hb_000813_100 Hb_000813_100 Hb_000594_020--Hb_000813_100 Hb_002659_060 Hb_002659_060 Hb_000594_020--Hb_002659_060 Hb_004899_070 Hb_004899_070 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_004970_160 Hb_004970_160 Hb_000594_020--Hb_004970_160 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000120_610--Hb_002659_060 Hb_140049_020 Hb_140049_020 Hb_000120_610--Hb_140049_020 Hb_000120_610--Hb_004899_070 Hb_000120_610--Hb_004970_160 Hb_000997_030 Hb_000997_030 Hb_000813_100--Hb_000997_030 Hb_000813_100--Hb_004899_070 Hb_147737_010 Hb_147737_010 Hb_000813_100--Hb_147737_010 Hb_000002_440 Hb_000002_440 Hb_000813_100--Hb_000002_440 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300 Hb_000504_160 Hb_000504_160 Hb_002659_060--Hb_000504_160 Hb_004920_130 Hb_004920_130 Hb_002659_060--Hb_004920_130 Hb_033883_060 Hb_033883_060 Hb_002659_060--Hb_033883_060 Hb_004635_050 Hb_004635_050 Hb_002659_060--Hb_004635_050 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_009151_020 Hb_009151_020 Hb_002411_120--Hb_009151_020 Hb_001080_270 Hb_001080_270 Hb_002411_120--Hb_001080_270 Hb_020665_030 Hb_020665_030 Hb_002411_120--Hb_020665_030 Hb_002499_070 Hb_002499_070 Hb_002411_120--Hb_002499_070 Hb_002411_120--Hb_004899_070 Hb_004970_160--Hb_000120_620 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.6456 44.1458 15.4283 13.5411 59.4581 59.4961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2017 11.7985 14.4818 27.0552 16.6632

CAGE analysis