Hb_000997_030

Information

Type -
Description -
Location Contig997: 47120-56593
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16320g
description POPTRDRAFT_832835; meprin and TRAF homology domain-containing family protein
nr
ID XP_012069783.1
description PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
swissprot
ID Q8RY18
description MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1
trembl
ID A0A067KZB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02286 PE=4 SV=1
Gene Ontology
ID GO:0005515
description math domain-containing protein at5g43560-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64844: 47179-56590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_030 0.0 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
2 Hb_000264_100 0.0574265919 - - conserved hypothetical protein [Ricinus communis]
3 Hb_030565_090 0.0576529347 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
4 Hb_000813_100 0.0617956016 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
5 Hb_000107_040 0.0666547296 - - nuclear pore complex protein nup153, putative [Ricinus communis]
6 Hb_000023_060 0.0686984806 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
7 Hb_034243_020 0.0706133807 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
8 Hb_004543_030 0.0707905336 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
9 Hb_029142_010 0.074118047 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
10 Hb_001493_040 0.0742776212 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
11 Hb_004659_080 0.0770176438 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
12 Hb_001080_270 0.0774018339 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
13 Hb_000594_020 0.0782914012 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
14 Hb_000227_380 0.0783686887 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
15 Hb_000120_610 0.0783731785 - - mitotic control protein dis3, putative [Ricinus communis]
16 Hb_002471_210 0.0785818247 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
17 Hb_056196_050 0.078844339 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
18 Hb_000363_130 0.0791298981 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
19 Hb_006252_020 0.0792472016 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
20 Hb_147737_010 0.0795369843 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000997_030 Hb_000997_030 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_030565_090 Hb_030565_090 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_000120_610 Hb_000120_610 Hb_000264_100--Hb_000120_610 Hb_000264_100--Hb_030565_090 Hb_140049_020 Hb_140049_020 Hb_000264_100--Hb_140049_020 Hb_000594_020 Hb_000594_020 Hb_000264_100--Hb_000594_020 Hb_004899_070 Hb_004899_070 Hb_000264_100--Hb_004899_070 Hb_000363_130 Hb_000363_130 Hb_030565_090--Hb_000363_130 Hb_030565_090--Hb_034243_020 Hb_033883_060 Hb_033883_060 Hb_030565_090--Hb_033883_060 Hb_031042_070 Hb_031042_070 Hb_030565_090--Hb_031042_070 Hb_000813_100--Hb_000594_020 Hb_000813_100--Hb_004899_070 Hb_147737_010 Hb_147737_010 Hb_000813_100--Hb_147737_010 Hb_000002_440 Hb_000002_440 Hb_000813_100--Hb_000002_440 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300 Hb_029142_010 Hb_029142_010 Hb_000107_040--Hb_029142_010 Hb_003623_030 Hb_003623_030 Hb_000107_040--Hb_003623_030 Hb_000107_040--Hb_000023_060 Hb_000107_040--Hb_030565_090 Hb_000107_040--Hb_000264_100 Hb_000023_060--Hb_029142_010 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_004543_030 Hb_004543_030 Hb_034243_020--Hb_004543_030 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_010315_090 Hb_010315_090 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.6224 51.0038 12.3069 15.784 45.8741 59.9172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4712 11.9651 20.1736 31.6969 20.2454

CAGE analysis