Hb_000264_100

Information

Type -
Description -
Location Contig264: 103221-115982
Sequence    

Annotation

kegg
ID rcu:RCOM_0935900
description hypothetical protein
nr
ID XP_002519035.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4JGZ1
description Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis thaliana GN=MED16 PE=1 SV=1
trembl
ID B9RZ66
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0935900 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27592: 103287-108587 , PASA_asmbl_27593: 108602-115937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000120_610 0.048414288 - - mitotic control protein dis3, putative [Ricinus communis]
3 Hb_000997_030 0.0574265919 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
4 Hb_030565_090 0.0705719314 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
5 Hb_140049_020 0.0747115177 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
6 Hb_000594_020 0.0753305908 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
7 Hb_004899_070 0.0761955101 - - PREDICTED: RRP12-like protein [Jatropha curcas]
8 Hb_034243_020 0.0764313772 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
9 Hb_000813_100 0.0764546572 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
10 Hb_004970_160 0.0777834627 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
11 Hb_000304_050 0.0793992354 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_000363_130 0.0798061039 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
13 Hb_004659_080 0.080438273 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
14 Hb_000032_010 0.0807458377 - - crooked neck protein, putative [Ricinus communis]
15 Hb_000107_040 0.0808432133 - - nuclear pore complex protein nup153, putative [Ricinus communis]
16 Hb_019153_020 0.0816737932 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
17 Hb_000227_380 0.0828778951 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
18 Hb_015763_020 0.0831505413 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
19 Hb_001080_270 0.0834233842 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
20 Hb_010315_090 0.0835482064 - - suppressor of ty, putative [Ricinus communis]

Gene co-expression network

sample Hb_000264_100 Hb_000264_100 Hb_000120_610 Hb_000120_610 Hb_000264_100--Hb_000120_610 Hb_000997_030 Hb_000997_030 Hb_000264_100--Hb_000997_030 Hb_030565_090 Hb_030565_090 Hb_000264_100--Hb_030565_090 Hb_140049_020 Hb_140049_020 Hb_000264_100--Hb_140049_020 Hb_000594_020 Hb_000594_020 Hb_000264_100--Hb_000594_020 Hb_004899_070 Hb_004899_070 Hb_000264_100--Hb_004899_070 Hb_000120_610--Hb_000594_020 Hb_002659_060 Hb_002659_060 Hb_000120_610--Hb_002659_060 Hb_000120_610--Hb_140049_020 Hb_000120_610--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_610--Hb_004970_160 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_000363_130 Hb_000363_130 Hb_030565_090--Hb_000363_130 Hb_030565_090--Hb_034243_020 Hb_033883_060 Hb_033883_060 Hb_030565_090--Hb_033883_060 Hb_031042_070 Hb_031042_070 Hb_030565_090--Hb_031042_070 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_140049_020--Hb_000363_130 Hb_000594_020--Hb_000813_100 Hb_000594_020--Hb_002659_060 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_000594_020--Hb_004970_160 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_004899_070--Hb_000813_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.4291 41.8238 11.3047 10.0179 41.579 38.7406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8467 8.77649 12.862 28.4133 13.9442

CAGE analysis