Hb_002659_060

Information

Type -
Description -
Location Contig2659: 98155-101652
Sequence    

Annotation

kegg
ID rcu:RCOM_1374250
description DNA binding protein, putative
nr
ID XP_012073569.1
description PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
swissprot
ID Q84JG2
description SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1
trembl
ID A0A067KP50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08034 PE=4 SV=1
Gene Ontology
ID GO:0003677
description swi snf complex subunit swi3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27756: 98434-101668 , PASA_asmbl_27757: 98357-101406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002659_060 0.0 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
2 Hb_000120_610 0.0595052689 - - mitotic control protein dis3, putative [Ricinus communis]
3 Hb_000594_020 0.0633578515 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
4 Hb_000504_160 0.0642784832 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
5 Hb_004920_130 0.0669413133 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
6 Hb_033883_060 0.0702800315 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
7 Hb_004635_050 0.0785591276 - - nucleolar phosphoprotein, putative [Ricinus communis]
8 Hb_031042_070 0.0792814249 - - conserved hypothetical protein [Ricinus communis]
9 Hb_140049_020 0.0802020957 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
10 Hb_000343_210 0.0809722157 - - ran-binding protein, putative [Ricinus communis]
11 Hb_000813_100 0.0826406807 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
12 Hb_002477_150 0.0835164999 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
13 Hb_001157_180 0.08599024 - - protein binding protein, putative [Ricinus communis]
14 Hb_000300_360 0.0861102836 - - PREDICTED: exosome component 10 [Jatropha curcas]
15 Hb_001946_300 0.0865692997 - - PREDICTED: F-box protein At-B [Jatropha curcas]
16 Hb_000264_100 0.087290779 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000186_260 0.0878950141 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
18 Hb_002813_010 0.0894715262 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
19 Hb_000424_010 0.0896270575 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
20 Hb_003540_160 0.0899326419 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]

Gene co-expression network

sample Hb_002659_060 Hb_002659_060 Hb_000120_610 Hb_000120_610 Hb_002659_060--Hb_000120_610 Hb_000594_020 Hb_000594_020 Hb_002659_060--Hb_000594_020 Hb_000504_160 Hb_000504_160 Hb_002659_060--Hb_000504_160 Hb_004920_130 Hb_004920_130 Hb_002659_060--Hb_004920_130 Hb_033883_060 Hb_033883_060 Hb_002659_060--Hb_033883_060 Hb_004635_050 Hb_004635_050 Hb_002659_060--Hb_004635_050 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000120_610--Hb_000594_020 Hb_140049_020 Hb_140049_020 Hb_000120_610--Hb_140049_020 Hb_004899_070 Hb_004899_070 Hb_000120_610--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_610--Hb_004970_160 Hb_000813_100 Hb_000813_100 Hb_000594_020--Hb_000813_100 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_000594_020--Hb_004970_160 Hb_001396_290 Hb_001396_290 Hb_000504_160--Hb_001396_290 Hb_000343_210 Hb_000343_210 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_004920_130--Hb_033883_060 Hb_001157_180 Hb_001157_180 Hb_004920_130--Hb_001157_180 Hb_031042_070 Hb_031042_070 Hb_004920_130--Hb_031042_070 Hb_004920_130--Hb_000813_100 Hb_000821_010 Hb_000821_010 Hb_004920_130--Hb_000821_010 Hb_033883_060--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_033883_060--Hb_001633_040 Hb_033883_060--Hb_004635_050 Hb_017075_030 Hb_017075_030 Hb_033883_060--Hb_017075_030 Hb_007943_120 Hb_007943_120 Hb_004635_050--Hb_007943_120 Hb_007558_120 Hb_007558_120 Hb_004635_050--Hb_007558_120 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_005883_010 Hb_005883_010 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.7625 37.0533 13.6367 9.54628 48.3351 37.5549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6772 12.1595 9.96639 19.6171 12.7934

CAGE analysis