Hb_001157_180

Information

Type -
Description -
Location Contig1157: 125689-131750
Sequence    

Annotation

kegg
ID rcu:RCOM_1455570
description protein binding protein, putative
nr
ID XP_002530871.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q54BM5
description Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1
trembl
ID B9SY02
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1455570 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna-binding kh domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04718: 125581-130391 , PASA_asmbl_04719: 128991-131743 , PASA_asmbl_04720: 128991-129188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_180 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_004920_130 0.0720740386 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
3 Hb_010128_090 0.0782941748 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
4 Hb_031042_070 0.0794072387 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000343_210 0.0835533849 - - ran-binding protein, putative [Ricinus communis]
6 Hb_017075_030 0.0838311221 - - helicase, putative [Ricinus communis]
7 Hb_000002_440 0.0843991361 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
8 Hb_025477_060 0.0844153519 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
9 Hb_001633_040 0.0854444256 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
10 Hb_002659_060 0.08599024 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
11 Hb_033883_060 0.0870022713 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
12 Hb_004970_150 0.0893079883 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
13 Hb_002813_010 0.090125929 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
14 Hb_000865_080 0.0906106475 - - arsenite-resistance protein, putative [Ricinus communis]
15 Hb_001584_170 0.0915315192 - - neutral/alkaline invertase [Manihot esculenta]
16 Hb_003020_110 0.0929751572 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_000813_100 0.0940087681 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
18 Hb_030565_090 0.0941148495 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
19 Hb_000327_310 0.0943319834 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
20 Hb_000096_180 0.0946904357 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_180 Hb_001157_180 Hb_004920_130 Hb_004920_130 Hb_001157_180--Hb_004920_130 Hb_010128_090 Hb_010128_090 Hb_001157_180--Hb_010128_090 Hb_031042_070 Hb_031042_070 Hb_001157_180--Hb_031042_070 Hb_000343_210 Hb_000343_210 Hb_001157_180--Hb_000343_210 Hb_017075_030 Hb_017075_030 Hb_001157_180--Hb_017075_030 Hb_000002_440 Hb_000002_440 Hb_001157_180--Hb_000002_440 Hb_002659_060 Hb_002659_060 Hb_004920_130--Hb_002659_060 Hb_033883_060 Hb_033883_060 Hb_004920_130--Hb_033883_060 Hb_004920_130--Hb_031042_070 Hb_000813_100 Hb_000813_100 Hb_004920_130--Hb_000813_100 Hb_000821_010 Hb_000821_010 Hb_004920_130--Hb_000821_010 Hb_000665_030 Hb_000665_030 Hb_010128_090--Hb_000665_030 Hb_010128_090--Hb_017075_030 Hb_003878_140 Hb_003878_140 Hb_010128_090--Hb_003878_140 Hb_000310_080 Hb_000310_080 Hb_010128_090--Hb_000310_080 Hb_010128_090--Hb_004920_130 Hb_001633_040 Hb_001633_040 Hb_031042_070--Hb_001633_040 Hb_031042_070--Hb_033883_060 Hb_007982_070 Hb_007982_070 Hb_031042_070--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_031042_070--Hb_000300_360 Hb_002163_010 Hb_002163_010 Hb_031042_070--Hb_002163_010 Hb_007632_020 Hb_007632_020 Hb_031042_070--Hb_007632_020 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_017075_030--Hb_003878_140 Hb_025477_060 Hb_025477_060 Hb_000002_440--Hb_025477_060 Hb_000227_380 Hb_000227_380 Hb_000002_440--Hb_000227_380 Hb_000002_440--Hb_000813_100 Hb_000096_180 Hb_000096_180 Hb_000002_440--Hb_000096_180 Hb_000594_020 Hb_000594_020 Hb_000002_440--Hb_000594_020 Hb_002883_010 Hb_002883_010 Hb_000002_440--Hb_002883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.2727 47.5957 12.1631 9.58518 49.1611 64.346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1149 18.1388 18.0401 24.3759 15.0636

CAGE analysis