Hb_010128_090

Information

Type -
Description -
Location Contig10128: 60340-63299
Sequence    

Annotation

kegg
ID rcu:RCOM_1436640
description DNA binding protein, putative
nr
ID XP_012088829.1
description PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00647: 61362-62980 , PASA_asmbl_00648: 63658-65026 , PASA_asmbl_00649: 64294-64764
cDNA
(Sanger)
(ID:Location)		 011_A02.ab1: 62222-62978

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010128_090 0.0 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
2 Hb_001157_180 0.0782941748 - - protein binding protein, putative [Ricinus communis]
3 Hb_000665_030 0.0856112215 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
4 Hb_017075_030 0.0877798365 - - helicase, putative [Ricinus communis]
5 Hb_003878_140 0.09457385 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
6 Hb_000310_080 0.094580658 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
7 Hb_004920_130 0.0956705338 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
8 Hb_001769_010 0.0961890053 - - conserved hypothetical protein [Ricinus communis]
9 Hb_031042_070 0.0999908316 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003106_150 0.104822491 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
11 Hb_000029_160 0.1073118149 - - Nitrilase, putative [Ricinus communis]
12 Hb_033883_060 0.1076936473 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
13 Hb_000224_060 0.1110494598 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
14 Hb_001584_170 0.1123229254 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_000865_080 0.1127491394 - - arsenite-resistance protein, putative [Ricinus communis]
16 Hb_000373_270 0.1127812798 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
17 Hb_002813_010 0.1135051172 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
18 Hb_003020_110 0.1135422785 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
19 Hb_045046_010 0.1137790441 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
20 Hb_001633_040 0.1142631481 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_010128_090 Hb_010128_090 Hb_001157_180 Hb_001157_180 Hb_010128_090--Hb_001157_180 Hb_000665_030 Hb_000665_030 Hb_010128_090--Hb_000665_030 Hb_017075_030 Hb_017075_030 Hb_010128_090--Hb_017075_030 Hb_003878_140 Hb_003878_140 Hb_010128_090--Hb_003878_140 Hb_000310_080 Hb_000310_080 Hb_010128_090--Hb_000310_080 Hb_004920_130 Hb_004920_130 Hb_010128_090--Hb_004920_130 Hb_001157_180--Hb_004920_130 Hb_031042_070 Hb_031042_070 Hb_001157_180--Hb_031042_070 Hb_000343_210 Hb_000343_210 Hb_001157_180--Hb_000343_210 Hb_001157_180--Hb_017075_030 Hb_000002_440 Hb_000002_440 Hb_001157_180--Hb_000002_440 Hb_005396_050 Hb_005396_050 Hb_000665_030--Hb_005396_050 Hb_000665_030--Hb_017075_030 Hb_015026_070 Hb_015026_070 Hb_000665_030--Hb_015026_070 Hb_001769_010 Hb_001769_010 Hb_000665_030--Hb_001769_010 Hb_000665_030--Hb_001157_180 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_017075_030--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_003878_140--Hb_000224_060 Hb_002977_010 Hb_002977_010 Hb_003878_140--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080 Hb_003020_110 Hb_003020_110 Hb_000310_080--Hb_003020_110 Hb_027405_020 Hb_027405_020 Hb_000310_080--Hb_027405_020 Hb_000029_160 Hb_000029_160 Hb_000310_080--Hb_000029_160 Hb_000032_320 Hb_000032_320 Hb_000310_080--Hb_000032_320 Hb_000373_270 Hb_000373_270 Hb_000310_080--Hb_000373_270 Hb_002659_060 Hb_002659_060 Hb_004920_130--Hb_002659_060 Hb_004920_130--Hb_033883_060 Hb_004920_130--Hb_031042_070 Hb_000813_100 Hb_000813_100 Hb_004920_130--Hb_000813_100 Hb_000821_010 Hb_000821_010 Hb_004920_130--Hb_000821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.1696 44.9493 9.56551 6.88223 34.6049 40.5521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1131 15.6492 20.2329 18.1674 9.79357

CAGE analysis