Hb_015026_070

Information

Type -
Description -
Location Contig15026: 42417-48120
Sequence    

Annotation

kegg
ID rcu:RCOM_1062990
description ARF GTPase activator, putative
nr
ID XP_012091514.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
swissprot
ID Q9FL69
description Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1
trembl
ID A0A067JDQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21369 PE=4 SV=1
Gene Ontology
ID GO:0005096
description probable adp-ribosylation factor gtpase-activating protein agd5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12597: 42706-46311 , PASA_asmbl_12598: 47921-48087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_070 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
2 Hb_076693_020 0.0892856109 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
3 Hb_023827_040 0.0894440893 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
4 Hb_002745_010 0.0945324486 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
5 Hb_045793_010 0.1037227588 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
6 Hb_001059_100 0.1051128129 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
7 Hb_124677_060 0.1083132688 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_006847_040 0.1095845075 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
9 Hb_001021_170 0.1122387633 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
10 Hb_000865_080 0.1130639216 - - arsenite-resistance protein, putative [Ricinus communis]
11 Hb_000322_150 0.1149542471 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
12 Hb_000025_360 0.1162532438 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
13 Hb_003206_030 0.1173964095 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
14 Hb_005375_040 0.1175471601 - - dicer-1, putative [Ricinus communis]
15 Hb_000218_010 0.1185258079 - - -
16 Hb_000441_070 0.1193413983 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
17 Hb_000796_180 0.1216025898 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
18 Hb_001718_090 0.1227379898 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
19 Hb_000092_020 0.1233612861 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
20 Hb_010738_010 0.123520824 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_015026_070 Hb_015026_070 Hb_076693_020 Hb_076693_020 Hb_015026_070--Hb_076693_020 Hb_023827_040 Hb_023827_040 Hb_015026_070--Hb_023827_040 Hb_002745_010 Hb_002745_010 Hb_015026_070--Hb_002745_010 Hb_045793_010 Hb_045793_010 Hb_015026_070--Hb_045793_010 Hb_001059_100 Hb_001059_100 Hb_015026_070--Hb_001059_100 Hb_124677_060 Hb_124677_060 Hb_015026_070--Hb_124677_060 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_023827_040--Hb_045793_010 Hb_000865_080 Hb_000865_080 Hb_023827_040--Hb_000865_080 Hb_023827_040--Hb_000025_360 Hb_000224_060 Hb_000224_060 Hb_023827_040--Hb_000224_060 Hb_001610_110 Hb_001610_110 Hb_023827_040--Hb_001610_110 Hb_001220_030 Hb_001220_030 Hb_002745_010--Hb_001220_030 Hb_002745_010--Hb_076693_020 Hb_002745_010--Hb_124677_060 Hb_000140_070 Hb_000140_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150 Hb_045793_010--Hb_000025_360 Hb_000827_070 Hb_000827_070 Hb_045793_010--Hb_000827_070 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_001059_100--Hb_000025_360 Hb_001059_100--Hb_000865_080 Hb_007676_100 Hb_007676_100 Hb_001059_100--Hb_007676_100 Hb_001059_100--Hb_000140_070 Hb_000959_040 Hb_000959_040 Hb_001059_100--Hb_000959_040 Hb_000291_190 Hb_000291_190 Hb_001059_100--Hb_000291_190 Hb_001053_030 Hb_001053_030 Hb_124677_060--Hb_001053_030 Hb_124677_060--Hb_001059_100 Hb_124677_060--Hb_000140_070 Hb_124677_060--Hb_001220_030 Hb_000340_110 Hb_000340_110 Hb_124677_060--Hb_000340_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.80946 18.2684 5.34407 1.95754 9.04052 14.3931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6162 7.48306 6.4979 5.86463 4.85464

CAGE analysis