Hb_124677_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig124677: 43790-46634
Sequence    

Annotation

kegg
ID rcu:RCOM_1577230
description DNA binding protein, putative
nr
ID XP_002513457.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9C690
description Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1
trembl
ID B9RI88
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1577230 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor bhlh122-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07458: 43865-46776 , PASA_asmbl_07460: 43921-44486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124677_060 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_001053_030 0.0755653562 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
3 Hb_002745_010 0.0878746168 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
4 Hb_001059_100 0.0933221385 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
5 Hb_000140_070 0.0959781873 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
6 Hb_001220_030 0.0970155124 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
7 Hb_000340_110 0.0972479631 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
8 Hb_000865_080 0.1042778834 - - arsenite-resistance protein, putative [Ricinus communis]
9 Hb_164010_070 0.1050962081 - - Paramyosin, putative [Ricinus communis]
10 Hb_042038_020 0.1070916219 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
11 Hb_015026_070 0.1083132688 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
12 Hb_000243_380 0.1105787531 - - PREDICTED: histone H1 [Jatropha curcas]
13 Hb_003206_030 0.1110963587 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
14 Hb_076693_020 0.1117612587 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
15 Hb_002477_150 0.1122047583 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
16 Hb_144824_010 0.1137494538 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
17 Hb_000291_190 0.1153865269 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
18 Hb_006316_070 0.1181621577 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
19 Hb_005946_170 0.1185900769 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
20 Hb_023827_040 0.1201389078 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_124677_060 Hb_124677_060 Hb_001053_030 Hb_001053_030 Hb_124677_060--Hb_001053_030 Hb_002745_010 Hb_002745_010 Hb_124677_060--Hb_002745_010 Hb_001059_100 Hb_001059_100 Hb_124677_060--Hb_001059_100 Hb_000140_070 Hb_000140_070 Hb_124677_060--Hb_000140_070 Hb_001220_030 Hb_001220_030 Hb_124677_060--Hb_001220_030 Hb_000340_110 Hb_000340_110 Hb_124677_060--Hb_000340_110 Hb_001053_030--Hb_000340_110 Hb_001053_030--Hb_002745_010 Hb_000336_140 Hb_000336_140 Hb_001053_030--Hb_000336_140 Hb_000243_380 Hb_000243_380 Hb_001053_030--Hb_000243_380 Hb_144824_010 Hb_144824_010 Hb_001053_030--Hb_144824_010 Hb_002745_010--Hb_001220_030 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150 Hb_000025_360 Hb_000025_360 Hb_001059_100--Hb_000025_360 Hb_000865_080 Hb_000865_080 Hb_001059_100--Hb_000865_080 Hb_007676_100 Hb_007676_100 Hb_001059_100--Hb_007676_100 Hb_001059_100--Hb_000140_070 Hb_000959_040 Hb_000959_040 Hb_001059_100--Hb_000959_040 Hb_000291_190 Hb_000291_190 Hb_001059_100--Hb_000291_190 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_000140_070--Hb_076693_020 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_001220_030--Hb_000291_190 Hb_001220_030--Hb_000865_080 Hb_000059_210 Hb_000059_210 Hb_001220_030--Hb_000059_210 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_000340_110--Hb_144824_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.888 45.635 7.22849 5.18702 22.1396 27.6464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3811 11.9897 10.8562 13.7874 4.26964

CAGE analysis