Hb_001348_150

Information

Type -
Description -
Location Contig1348: 123088-125411
Sequence    

Annotation

kegg
ID rcu:RCOM_1031040
description hypothetical protein
nr
ID XP_012078239.1
description PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
swissprot
ID Q9STN5
description Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1
trembl
ID A0A067K9A9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12093 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein At4g08330, chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09815: 123096-125378
cDNA
(Sanger)
(ID:Location)		 025_M11.ab1: 123417-125378

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_150 0.0 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
2 Hb_001247_120 0.0890651918 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
3 Hb_002745_010 0.0964343248 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
4 Hb_076693_020 0.1095453385 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
5 Hb_001053_030 0.1113269183 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_000140_070 0.1118008896 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
7 Hb_011512_080 0.1121437342 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
8 Hb_146464_010 0.1134632019 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_000243_380 0.1144653655 - - PREDICTED: histone H1 [Jatropha curcas]
10 Hb_000421_120 0.1172268391 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
11 Hb_000457_050 0.1181184494 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
12 Hb_001220_030 0.1189006403 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
13 Hb_001610_110 0.119582078 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
14 Hb_004032_270 0.1196176053 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
15 Hb_124677_060 0.121662842 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_000218_010 0.1232404682 - - -
17 Hb_023827_040 0.1239668011 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
18 Hb_005551_060 0.1248424881 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
19 Hb_000322_150 0.1256800736 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
20 Hb_003373_040 0.127957368 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]

Gene co-expression network

sample Hb_001348_150 Hb_001348_150 Hb_001247_120 Hb_001247_120 Hb_001348_150--Hb_001247_120 Hb_002745_010 Hb_002745_010 Hb_001348_150--Hb_002745_010 Hb_076693_020 Hb_076693_020 Hb_001348_150--Hb_076693_020 Hb_001053_030 Hb_001053_030 Hb_001348_150--Hb_001053_030 Hb_000140_070 Hb_000140_070 Hb_001348_150--Hb_000140_070 Hb_011512_080 Hb_011512_080 Hb_001348_150--Hb_011512_080 Hb_005551_060 Hb_005551_060 Hb_001247_120--Hb_005551_060 Hb_001860_020 Hb_001860_020 Hb_001247_120--Hb_001860_020 Hb_001864_060 Hb_001864_060 Hb_001247_120--Hb_001864_060 Hb_000025_330 Hb_000025_330 Hb_001247_120--Hb_000025_330 Hb_000672_030 Hb_000672_030 Hb_001247_120--Hb_000672_030 Hb_001220_030 Hb_001220_030 Hb_002745_010--Hb_001220_030 Hb_002745_010--Hb_076693_020 Hb_124677_060 Hb_124677_060 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_002745_010--Hb_000140_070 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_001053_030--Hb_124677_060 Hb_000340_110 Hb_000340_110 Hb_001053_030--Hb_000340_110 Hb_001053_030--Hb_002745_010 Hb_000336_140 Hb_000336_140 Hb_001053_030--Hb_000336_140 Hb_000243_380 Hb_000243_380 Hb_001053_030--Hb_000243_380 Hb_144824_010 Hb_144824_010 Hb_001053_030--Hb_144824_010 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_000140_070--Hb_076693_020 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_000140_070--Hb_006847_040 Hb_004970_090 Hb_004970_090 Hb_011512_080--Hb_004970_090 Hb_112798_020 Hb_112798_020 Hb_011512_080--Hb_112798_020 Hb_002272_020 Hb_002272_020 Hb_011512_080--Hb_002272_020 Hb_000563_230 Hb_000563_230 Hb_011512_080--Hb_000563_230 Hb_005288_170 Hb_005288_170 Hb_011512_080--Hb_005288_170 Hb_000275_170 Hb_000275_170 Hb_011512_080--Hb_000275_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3793 46.7014 8.94178 10.9093 22.5035 22.0078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9377 24.0736 9.58608 10.3698 4.80842

CAGE analysis