Hb_005551_060

Information

Type -
Description -
Location Contig5551: 56839-57522
Sequence    

Annotation

kegg
ID rcu:RCOM_0437750
description hypothetical protein
nr
ID XP_012074330.1
description PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08767 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005551_060 0.0 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
2 Hb_001247_120 0.0840987849 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
3 Hb_027506_020 0.1030251997 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
4 Hb_001220_030 0.1031886613 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
5 Hb_000140_070 0.103361409 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
6 Hb_002745_010 0.1088460024 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
7 Hb_146464_010 0.1092009876 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
8 Hb_004032_270 0.1104779783 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
9 Hb_001864_060 0.1165016344 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
10 Hb_004785_060 0.1180216477 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
11 Hb_005396_050 0.1201630224 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
12 Hb_001348_150 0.1248424881 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
13 Hb_000665_010 0.1282753105 - - hypothetical protein 20 [Hevea brasiliensis]
14 Hb_116086_010 0.1285863402 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
15 Hb_012807_050 0.1289989658 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
16 Hb_006847_040 0.1307926957 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
17 Hb_076693_020 0.1310602106 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
18 Hb_002374_310 0.1313050461 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
19 Hb_003055_060 0.1324572134 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
20 Hb_001268_390 0.1328546926 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005551_060 Hb_005551_060 Hb_001247_120 Hb_001247_120 Hb_005551_060--Hb_001247_120 Hb_027506_020 Hb_027506_020 Hb_005551_060--Hb_027506_020 Hb_001220_030 Hb_001220_030 Hb_005551_060--Hb_001220_030 Hb_000140_070 Hb_000140_070 Hb_005551_060--Hb_000140_070 Hb_002745_010 Hb_002745_010 Hb_005551_060--Hb_002745_010 Hb_146464_010 Hb_146464_010 Hb_005551_060--Hb_146464_010 Hb_001860_020 Hb_001860_020 Hb_001247_120--Hb_001860_020 Hb_001348_150 Hb_001348_150 Hb_001247_120--Hb_001348_150 Hb_001864_060 Hb_001864_060 Hb_001247_120--Hb_001864_060 Hb_000025_330 Hb_000025_330 Hb_001247_120--Hb_000025_330 Hb_000672_030 Hb_000672_030 Hb_001247_120--Hb_000672_030 Hb_001828_130 Hb_001828_130 Hb_027506_020--Hb_001828_130 Hb_003752_100 Hb_003752_100 Hb_027506_020--Hb_003752_100 Hb_027506_020--Hb_000140_070 Hb_076693_020 Hb_076693_020 Hb_027506_020--Hb_076693_020 Hb_004785_060 Hb_004785_060 Hb_027506_020--Hb_004785_060 Hb_012807_050 Hb_012807_050 Hb_027506_020--Hb_012807_050 Hb_001220_030--Hb_002745_010 Hb_001220_030--Hb_000140_070 Hb_000291_190 Hb_000291_190 Hb_001220_030--Hb_000291_190 Hb_124677_060 Hb_124677_060 Hb_001220_030--Hb_124677_060 Hb_000865_080 Hb_000865_080 Hb_001220_030--Hb_000865_080 Hb_000059_210 Hb_000059_210 Hb_001220_030--Hb_000059_210 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_000140_070--Hb_076693_020 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_002745_010--Hb_076693_020 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_002745_010--Hb_000140_070 Hb_002745_010--Hb_001348_150 Hb_146464_010--Hb_001348_150 Hb_146464_010--Hb_001247_120 Hb_006582_020 Hb_006582_020 Hb_146464_010--Hb_006582_020 Hb_004032_270 Hb_004032_270 Hb_146464_010--Hb_004032_270 Hb_001610_110 Hb_001610_110 Hb_146464_010--Hb_001610_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.9973 156.56 17.3839 48.4892 66.2203 72.5159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.0673 60.6316 62.7749 26.1933 19.9494

CAGE analysis