Hb_004032_270

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig4032: 283069-285138
Sequence    

Annotation

kegg
ID rcu:RCOM_1602480
description protein with unknown function
nr
ID XP_002510750.1
description protein with unknown function [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8V7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40035: 283124-285087
cDNA
(Sanger)
(ID:Location)		 028_J09.ab1: 283422-284733 , 041_H13.ab1: 283702-285066 , 050_G19.ab1: 283726-285066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_270 0.0 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
2 Hb_009838_050 0.0860847592 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001318_030 0.0872822273 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
4 Hb_001610_110 0.092265579 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
5 Hb_076693_020 0.1019438002 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
6 Hb_000567_210 0.1023501805 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
7 Hb_012807_050 0.1055213016 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
8 Hb_005928_110 0.1060427907 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
9 Hb_006582_020 0.1068955785 - - Zinc finger protein ZFPM1 [Theobroma cacao]
10 Hb_023827_040 0.1072782608 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
11 Hb_045793_010 0.107459609 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
12 Hb_005551_060 0.1104779783 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
13 Hb_000016_100 0.1108214918 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
14 Hb_001623_140 0.1116051058 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
15 Hb_001073_070 0.1118815693 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
16 Hb_004128_060 0.1136657069 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
17 Hb_000109_160 0.1143380725 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
18 Hb_005551_050 0.1147235996 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
19 Hb_002745_010 0.1149077772 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
20 Hb_000237_080 0.1162656798 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_270 Hb_004032_270 Hb_009838_050 Hb_009838_050 Hb_004032_270--Hb_009838_050 Hb_001318_030 Hb_001318_030 Hb_004032_270--Hb_001318_030 Hb_001610_110 Hb_001610_110 Hb_004032_270--Hb_001610_110 Hb_076693_020 Hb_076693_020 Hb_004032_270--Hb_076693_020 Hb_000567_210 Hb_000567_210 Hb_004032_270--Hb_000567_210 Hb_012807_050 Hb_012807_050 Hb_004032_270--Hb_012807_050 Hb_009838_050--Hb_076693_020 Hb_009838_050--Hb_012807_050 Hb_009838_050--Hb_001318_030 Hb_045793_010 Hb_045793_010 Hb_009838_050--Hb_045793_010 Hb_002435_110 Hb_002435_110 Hb_009838_050--Hb_002435_110 Hb_000237_080 Hb_000237_080 Hb_001318_030--Hb_000237_080 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_001623_140 Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_000732_140 Hb_000732_140 Hb_000567_210--Hb_000732_140 Hb_000859_060 Hb_000859_060 Hb_000567_210--Hb_000859_060 Hb_000567_210--Hb_001623_140 Hb_000203_160 Hb_000203_160 Hb_000567_210--Hb_000203_160 Hb_003052_140 Hb_003052_140 Hb_000567_210--Hb_003052_140 Hb_003055_060 Hb_003055_060 Hb_000567_210--Hb_003055_060 Hb_004785_060 Hb_004785_060 Hb_012807_050--Hb_004785_060 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_012807_050--Hb_010172_090 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.6905 73.6177 9.87018 17.9236 38.7045 49.9865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.1039 61.0129 33.9349 21.4771 16.0444

CAGE analysis