Hb_002435_110

Information

Type transcription factor
Description TF Family: SNF2
Location Contig2435: 144062-152389
Sequence    

Annotation

kegg
ID rcu:RCOM_1609320
description helicase, putative (EC:2.7.11.1)
nr
ID XP_012083688.1
description PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
swissprot
ID Q86WJ1
description Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens GN=CHD1L PE=1 SV=2
trembl
ID B9RD39
description Helicase, putative OS=Ricinus communis GN=RCOM_1609320 PE=4 SV=1
Gene Ontology
ID GO:0004003
description chromodomain-helicase-dna-binding protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25444: 144095-147255 , PASA_asmbl_25445: 147747-149137 , PASA_asmbl_25446: 150172-151973
cDNA
(Sanger)
(ID:Location)		 011_F17.ab1: 144095-145717

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002435_110 0.0 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
2 Hb_006582_020 0.1006037488 - - Zinc finger protein ZFPM1 [Theobroma cacao]
3 Hb_000567_210 0.1035120004 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
4 Hb_000859_060 0.1041970226 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
5 Hb_002685_170 0.1056245269 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
6 Hb_009838_050 0.1087971621 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009767_100 0.1128703948 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
8 Hb_001073_070 0.113965626 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
9 Hb_000237_080 0.1149681794 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
10 Hb_002813_050 0.1162214851 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
11 Hb_012807_050 0.1165490375 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
12 Hb_005015_070 0.1194790356 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
13 Hb_001318_030 0.119536038 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
14 Hb_000203_160 0.1210628233 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
15 Hb_076693_020 0.1213180392 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
16 Hb_004032_270 0.1229582224 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
17 Hb_004491_010 0.1241988518 - - 60S ribosomal protein L51, putative [Ricinus communis]
18 Hb_000189_560 0.1242864053 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
19 Hb_005288_010 0.1249499377 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000016_100 0.1251671642 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]

Gene co-expression network

sample Hb_002435_110 Hb_002435_110 Hb_006582_020 Hb_006582_020 Hb_002435_110--Hb_006582_020 Hb_000567_210 Hb_000567_210 Hb_002435_110--Hb_000567_210 Hb_000859_060 Hb_000859_060 Hb_002435_110--Hb_000859_060 Hb_002685_170 Hb_002685_170 Hb_002435_110--Hb_002685_170 Hb_009838_050 Hb_009838_050 Hb_002435_110--Hb_009838_050 Hb_009767_100 Hb_009767_100 Hb_002435_110--Hb_009767_100 Hb_004032_270 Hb_004032_270 Hb_006582_020--Hb_004032_270 Hb_005843_100 Hb_005843_100 Hb_006582_020--Hb_005843_100 Hb_000016_100 Hb_000016_100 Hb_006582_020--Hb_000016_100 Hb_001318_030 Hb_001318_030 Hb_006582_020--Hb_001318_030 Hb_000237_080 Hb_000237_080 Hb_006582_020--Hb_000237_080 Hb_000732_140 Hb_000732_140 Hb_000567_210--Hb_000732_140 Hb_000567_210--Hb_000859_060 Hb_001623_140 Hb_001623_140 Hb_000567_210--Hb_001623_140 Hb_000203_160 Hb_000203_160 Hb_000567_210--Hb_000203_160 Hb_003052_140 Hb_003052_140 Hb_000567_210--Hb_003052_140 Hb_003055_060 Hb_003055_060 Hb_000567_210--Hb_003055_060 Hb_004785_060 Hb_004785_060 Hb_000859_060--Hb_004785_060 Hb_000085_100 Hb_000085_100 Hb_000859_060--Hb_000085_100 Hb_000859_060--Hb_009767_100 Hb_000000_370 Hb_000000_370 Hb_000859_060--Hb_000000_370 Hb_001178_140 Hb_001178_140 Hb_000859_060--Hb_001178_140 Hb_004355_020 Hb_004355_020 Hb_000859_060--Hb_004355_020 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_005357_030 Hb_005357_030 Hb_002685_170--Hb_005357_030 Hb_004223_280 Hb_004223_280 Hb_002685_170--Hb_004223_280 Hb_007590_050 Hb_007590_050 Hb_002685_170--Hb_007590_050 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002685_170--Hb_003126_080 Hb_009838_050--Hb_004032_270 Hb_076693_020 Hb_076693_020 Hb_009838_050--Hb_076693_020 Hb_012807_050 Hb_012807_050 Hb_009838_050--Hb_012807_050 Hb_009838_050--Hb_001318_030 Hb_045793_010 Hb_045793_010 Hb_009838_050--Hb_045793_010 Hb_001005_190 Hb_001005_190 Hb_009767_100--Hb_001005_190 Hb_005288_010 Hb_005288_010 Hb_009767_100--Hb_005288_010 Hb_009767_100--Hb_003055_060 Hb_012055_060 Hb_012055_060 Hb_009767_100--Hb_012055_060 Hb_000189_560 Hb_000189_560 Hb_009767_100--Hb_000189_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08091 4.4549 1.14948 0.562305 2.521 2.58457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87452 3.89114 3.15989 2.75702 0.699858

CAGE analysis