Hb_009838_050

Information

Type -
Description -
Location Contig9838: 14692-18973
Sequence    

Annotation

kegg
ID rcu:RCOM_1217410
description hypothetical protein
nr
ID XP_002528354.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217410 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64513: 15895-17800 , PASA_asmbl_64514: 15302-16250 , PASA_asmbl_64515: 18429-18584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004032_270 0.0860847592 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
3 Hb_076693_020 0.0937156804 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
4 Hb_012807_050 0.1031194312 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
5 Hb_001318_030 0.1038397671 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
6 Hb_045793_010 0.1077916818 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
7 Hb_002435_110 0.1087971621 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
8 Hb_023827_040 0.1103400413 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
9 Hb_027506_020 0.1107098262 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
10 Hb_005015_070 0.1113001939 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
11 Hb_004128_060 0.1121801157 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
12 Hb_000016_100 0.112673189 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
13 Hb_010172_090 0.1137446573 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000976_310 0.1138114313 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
15 Hb_000768_040 0.1141878545 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
16 Hb_002477_030 0.1145403628 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
17 Hb_001912_100 0.116349833 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
18 Hb_000827_070 0.1188367789 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_120327_010 0.1215675912 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
20 Hb_003952_090 0.1216729038 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009838_050 Hb_009838_050 Hb_004032_270 Hb_004032_270 Hb_009838_050--Hb_004032_270 Hb_076693_020 Hb_076693_020 Hb_009838_050--Hb_076693_020 Hb_012807_050 Hb_012807_050 Hb_009838_050--Hb_012807_050 Hb_001318_030 Hb_001318_030 Hb_009838_050--Hb_001318_030 Hb_045793_010 Hb_045793_010 Hb_009838_050--Hb_045793_010 Hb_002435_110 Hb_002435_110 Hb_009838_050--Hb_002435_110 Hb_004032_270--Hb_001318_030 Hb_001610_110 Hb_001610_110 Hb_004032_270--Hb_001610_110 Hb_004032_270--Hb_076693_020 Hb_000567_210 Hb_000567_210 Hb_004032_270--Hb_000567_210 Hb_004032_270--Hb_012807_050 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_004785_060 Hb_004785_060 Hb_012807_050--Hb_004785_060 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_012807_050--Hb_010172_090 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050 Hb_000237_080 Hb_000237_080 Hb_001318_030--Hb_000237_080 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_045793_010--Hb_000025_360 Hb_000827_070 Hb_000827_070 Hb_045793_010--Hb_000827_070 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_006582_020 Hb_006582_020 Hb_002435_110--Hb_006582_020 Hb_002435_110--Hb_000567_210 Hb_000859_060 Hb_000859_060 Hb_002435_110--Hb_000859_060 Hb_002685_170 Hb_002685_170 Hb_002435_110--Hb_002685_170 Hb_009767_100 Hb_009767_100 Hb_002435_110--Hb_009767_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50763 5.15421 0.743304 0.838117 3.08583 4.03763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50976 4.21212 2.61519 2.2086 1.31837

CAGE analysis