Hb_000567_210

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig567: 257396-258358
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11850g
description POPTRDRAFT_554278; hypothetical protein
nr
ID XP_012091775.1
description PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
swissprot
ID Q9SYG2
description Trihelix transcription factor ASIL1 OS=Arabidopsis thaliana GN=ASIL1 PE=1 SV=1
trembl
ID A0A067JBF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21568 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49131: 257369-257486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_210 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
2 Hb_000732_140 0.0900077041 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
3 Hb_000859_060 0.0931288712 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
4 Hb_001623_140 0.0941302955 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
5 Hb_000203_160 0.0966751403 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
6 Hb_003052_140 0.0975779346 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
7 Hb_003055_060 0.0976571877 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
8 Hb_009767_100 0.0988899737 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
9 Hb_004324_340 0.0999324882 - - conserved hypothetical protein [Ricinus communis]
10 Hb_126643_020 0.0999860165 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
11 Hb_002685_010 0.1003967289 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
12 Hb_001021_170 0.100563938 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
13 Hb_004785_060 0.1011252772 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
14 Hb_045793_010 0.1011612434 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
15 Hb_001621_150 0.1016793945 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
16 Hb_004032_270 0.1023501805 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
17 Hb_001610_110 0.1028803188 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
18 Hb_002435_110 0.1035120004 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
19 Hb_002085_110 0.1053364562 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
20 Hb_000336_250 0.1057446431 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000567_210 Hb_000567_210 Hb_000732_140 Hb_000732_140 Hb_000567_210--Hb_000732_140 Hb_000859_060 Hb_000859_060 Hb_000567_210--Hb_000859_060 Hb_001623_140 Hb_001623_140 Hb_000567_210--Hb_001623_140 Hb_000203_160 Hb_000203_160 Hb_000567_210--Hb_000203_160 Hb_003052_140 Hb_003052_140 Hb_000567_210--Hb_003052_140 Hb_003055_060 Hb_003055_060 Hb_000567_210--Hb_003055_060 Hb_077562_050 Hb_077562_050 Hb_000732_140--Hb_077562_050 Hb_002301_220 Hb_002301_220 Hb_000732_140--Hb_002301_220 Hb_000453_170 Hb_000453_170 Hb_000732_140--Hb_000453_170 Hb_005188_050 Hb_005188_050 Hb_000732_140--Hb_005188_050 Hb_000085_100 Hb_000085_100 Hb_000732_140--Hb_000085_100 Hb_004785_060 Hb_004785_060 Hb_000859_060--Hb_004785_060 Hb_000859_060--Hb_000085_100 Hb_009767_100 Hb_009767_100 Hb_000859_060--Hb_009767_100 Hb_000000_370 Hb_000000_370 Hb_000859_060--Hb_000000_370 Hb_001178_140 Hb_001178_140 Hb_000859_060--Hb_001178_140 Hb_004355_020 Hb_004355_020 Hb_000859_060--Hb_004355_020 Hb_001168_040 Hb_001168_040 Hb_001623_140--Hb_001168_040 Hb_001610_110 Hb_001610_110 Hb_001623_140--Hb_001610_110 Hb_001288_080 Hb_001288_080 Hb_001623_140--Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_001623_140--Hb_001720_010 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_004324_340 Hb_004324_340 Hb_001623_140--Hb_004324_340 Hb_126643_020 Hb_126643_020 Hb_000203_160--Hb_126643_020 Hb_004837_040 Hb_004837_040 Hb_000203_160--Hb_004837_040 Hb_002685_010 Hb_002685_010 Hb_000203_160--Hb_002685_010 Hb_004907_110 Hb_004907_110 Hb_000203_160--Hb_004907_110 Hb_000554_020 Hb_000554_020 Hb_000203_160--Hb_000554_020 Hb_002496_030 Hb_002496_030 Hb_000203_160--Hb_002496_030 Hb_000336_250 Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_000125_170 Hb_000125_170 Hb_003052_140--Hb_000125_170 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_005541_010 Hb_005541_010 Hb_003052_140--Hb_005541_010 Hb_012055_060 Hb_012055_060 Hb_003055_060--Hb_012055_060 Hb_003055_060--Hb_009767_100 Hb_005288_010 Hb_005288_010 Hb_003055_060--Hb_005288_010 Hb_000243_250 Hb_000243_250 Hb_003055_060--Hb_000243_250 Hb_011491_010 Hb_011491_010 Hb_003055_060--Hb_011491_010 Hb_001005_190 Hb_001005_190 Hb_003055_060--Hb_001005_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.424 46.9263 13.0414 10.1902 32.0722 24.9191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.9556 35.9323 33.2369 18.5301 12.436

CAGE analysis