Hb_126643_020

Information

Type transcription factor
Description TF Family: GeBP
Location Contig126643: 6889-8094
Sequence    

Annotation

kegg
ID rcu:RCOM_1428550
description transcription regulator, putative
nr
ID XP_012089211.1
description PREDICTED: mediator-associated protein 1 [Jatropha curcas]
swissprot
ID Q9SB42
description Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210 PE=1 SV=1
trembl
ID A0A067JI48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23459 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126643_020 0.0 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
2 Hb_000203_160 0.0519003941 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
3 Hb_002685_010 0.0683013983 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
4 Hb_002085_110 0.0739110214 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
5 Hb_002518_140 0.0794449354 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
6 Hb_005699_070 0.0800739351 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
7 Hb_004491_010 0.0810118205 - - 60S ribosomal protein L51, putative [Ricinus communis]
8 Hb_003862_050 0.082340335 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
9 Hb_004907_110 0.0828387602 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
10 Hb_002685_170 0.0829195683 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
11 Hb_002496_030 0.08414614 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
12 Hb_000445_180 0.0843843713 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
13 Hb_031527_040 0.0847023827 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
14 Hb_000754_060 0.0850447198 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
15 Hb_000859_060 0.0855093325 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
16 Hb_005348_140 0.0859568771 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
17 Hb_004837_040 0.0866277344 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
18 Hb_000030_300 0.086890219 - - Thioredoxin, putative [Ricinus communis]
19 Hb_001623_420 0.0876790878 - - nucleotide binding protein, putative [Ricinus communis]
20 Hb_000175_460 0.0877751908 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_126643_020 Hb_126643_020 Hb_000203_160 Hb_000203_160 Hb_126643_020--Hb_000203_160 Hb_002685_010 Hb_002685_010 Hb_126643_020--Hb_002685_010 Hb_002085_110 Hb_002085_110 Hb_126643_020--Hb_002085_110 Hb_002518_140 Hb_002518_140 Hb_126643_020--Hb_002518_140 Hb_005699_070 Hb_005699_070 Hb_126643_020--Hb_005699_070 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010 Hb_004837_040 Hb_004837_040 Hb_000203_160--Hb_004837_040 Hb_000203_160--Hb_002685_010 Hb_004907_110 Hb_004907_110 Hb_000203_160--Hb_004907_110 Hb_000554_020 Hb_000554_020 Hb_000203_160--Hb_000554_020 Hb_002496_030 Hb_002496_030 Hb_000203_160--Hb_002496_030 Hb_002685_010--Hb_002085_110 Hb_000139_410 Hb_000139_410 Hb_002685_010--Hb_000139_410 Hb_000127_130 Hb_000127_130 Hb_002685_010--Hb_000127_130 Hb_002685_010--Hb_005699_070 Hb_002150_080 Hb_002150_080 Hb_002085_110--Hb_002150_080 Hb_001277_270 Hb_001277_270 Hb_002085_110--Hb_001277_270 Hb_002685_170 Hb_002685_170 Hb_002085_110--Hb_002685_170 Hb_002375_020 Hb_002375_020 Hb_002085_110--Hb_002375_020 Hb_001277_330 Hb_001277_330 Hb_002518_140--Hb_001277_330 Hb_010795_010 Hb_010795_010 Hb_002518_140--Hb_010795_010 Hb_013405_030 Hb_013405_030 Hb_002518_140--Hb_013405_030 Hb_010172_050 Hb_010172_050 Hb_002518_140--Hb_010172_050 Hb_171900_080 Hb_171900_080 Hb_002518_140--Hb_171900_080 Hb_002216_040 Hb_002216_040 Hb_005699_070--Hb_002216_040 Hb_000503_050 Hb_000503_050 Hb_005699_070--Hb_000503_050 Hb_002105_040 Hb_002105_040 Hb_005699_070--Hb_002105_040 Hb_005618_170 Hb_005618_170 Hb_005699_070--Hb_005618_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.2298 46.8022 26.1768 21.0903 48.8985 45.7277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.3645 63.8281 77.3879 36.1133 18.1255

CAGE analysis