Hb_000127_130

Information

Type -
Description -
Location Contig127: 175916-179226
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06540g
description POPTRDRAFT_643441; hypothetical protein
nr
ID XP_012073945.1
description PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08327 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08285: 178310-179087 , PASA_asmbl_08286: 175907-181645 , PASA_asmbl_08288: 179294-179689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_130 0.0 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
2 Hb_000031_060 0.077613165 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
3 Hb_002256_030 0.0829717141 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002685_010 0.0881697319 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
5 Hb_109092_010 0.0913220109 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_000139_410 0.0924192814 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
7 Hb_001488_070 0.0951959961 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000181_070 0.0963088618 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002027_260 0.0964992921 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
10 Hb_000512_060 0.0972538268 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
11 Hb_126643_020 0.0985112159 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
12 Hb_000866_270 0.0991515376 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
13 Hb_000230_200 0.0995860862 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
14 Hb_001301_160 0.1004640137 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
15 Hb_001259_090 0.1005700388 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
16 Hb_000203_160 0.1011085035 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
17 Hb_031527_040 0.1019251793 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
18 Hb_010381_070 0.101930591 - - PREDICTED: protein STU1-like [Jatropha curcas]
19 Hb_002007_060 0.1023828784 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
20 Hb_020956_020 0.102936291 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000127_130 Hb_000127_130 Hb_000031_060 Hb_000031_060 Hb_000127_130--Hb_000031_060 Hb_002256_030 Hb_002256_030 Hb_000127_130--Hb_002256_030 Hb_002685_010 Hb_002685_010 Hb_000127_130--Hb_002685_010 Hb_109092_010 Hb_109092_010 Hb_000127_130--Hb_109092_010 Hb_000139_410 Hb_000139_410 Hb_000127_130--Hb_000139_410 Hb_001488_070 Hb_001488_070 Hb_000127_130--Hb_001488_070 Hb_000445_180 Hb_000445_180 Hb_000031_060--Hb_000445_180 Hb_011671_430 Hb_011671_430 Hb_000031_060--Hb_011671_430 Hb_000521_320 Hb_000521_320 Hb_000031_060--Hb_000521_320 Hb_000059_330 Hb_000059_330 Hb_000031_060--Hb_000059_330 Hb_003092_040 Hb_003092_040 Hb_000031_060--Hb_003092_040 Hb_036790_100 Hb_036790_100 Hb_002256_030--Hb_036790_100 Hb_031527_040 Hb_031527_040 Hb_002256_030--Hb_031527_040 Hb_004032_360 Hb_004032_360 Hb_002256_030--Hb_004032_360 Hb_001552_020 Hb_001552_020 Hb_002256_030--Hb_001552_020 Hb_001242_060 Hb_001242_060 Hb_002256_030--Hb_001242_060 Hb_002739_100 Hb_002739_100 Hb_002256_030--Hb_002739_100 Hb_126643_020 Hb_126643_020 Hb_002685_010--Hb_126643_020 Hb_000203_160 Hb_000203_160 Hb_002685_010--Hb_000203_160 Hb_002085_110 Hb_002085_110 Hb_002685_010--Hb_002085_110 Hb_002685_010--Hb_000139_410 Hb_005699_070 Hb_005699_070 Hb_002685_010--Hb_005699_070 Hb_000109_160 Hb_000109_160 Hb_109092_010--Hb_000109_160 Hb_000245_130 Hb_000245_130 Hb_109092_010--Hb_000245_130 Hb_020956_020 Hb_020956_020 Hb_109092_010--Hb_020956_020 Hb_096563_010 Hb_096563_010 Hb_109092_010--Hb_096563_010 Hb_001252_010 Hb_001252_010 Hb_109092_010--Hb_001252_010 Hb_010381_070 Hb_010381_070 Hb_000139_410--Hb_010381_070 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_001584_330 Hb_001584_330 Hb_000139_410--Hb_001584_330 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080 Hb_002813_040 Hb_002813_040 Hb_001488_070--Hb_002813_040 Hb_000512_060 Hb_000512_060 Hb_001488_070--Hb_000512_060 Hb_000175_460 Hb_000175_460 Hb_001488_070--Hb_000175_460 Hb_001488_070--Hb_031527_040 Hb_005686_060 Hb_005686_060 Hb_001488_070--Hb_005686_060 Hb_000510_320 Hb_000510_320 Hb_001488_070--Hb_000510_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
258.287 151.724 57.0126 108.111 137.036 144.405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
183.38 206.038 179.32 59.6348 62.4602

CAGE analysis