Hb_000512_060

Information

Type -
Description -
Location Contig512: 70515-72131
Sequence    

Annotation

kegg
ID rcu:RCOM_1109740
description F-box and wd40 domain protein, putative
nr
ID XP_012066291.1
description PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
swissprot
ID Q94AD8
description F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1
trembl
ID A0A067LFM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23851 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box wd-40 repeat-containing protein at5g21040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000512_060 0.0 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
2 Hb_000181_070 0.066942573 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_002105_040 0.0703412046 - - -
4 Hb_000230_120 0.0731130498 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
5 Hb_009178_030 0.0735373763 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000175_460 0.074466876 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_000035_320 0.0745835838 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
8 Hb_002835_080 0.0757550958 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
9 Hb_001488_070 0.0759522383 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007532_030 0.0769214512 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
11 Hb_001242_060 0.0778813935 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
12 Hb_005348_140 0.078295743 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
13 Hb_007416_180 0.0794291734 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_002026_180 0.0799957513 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
15 Hb_031527_040 0.0817767118 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
16 Hb_008725_260 0.0818648901 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
17 Hb_000876_070 0.0829151794 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
18 Hb_000125_130 0.0837024351 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
19 Hb_000699_140 0.0837830672 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
20 Hb_005663_060 0.0839006976 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]

Gene co-expression network

sample Hb_000512_060 Hb_000512_060 Hb_000181_070 Hb_000181_070 Hb_000512_060--Hb_000181_070 Hb_002105_040 Hb_002105_040 Hb_000512_060--Hb_002105_040 Hb_000230_120 Hb_000230_120 Hb_000512_060--Hb_000230_120 Hb_009178_030 Hb_009178_030 Hb_000512_060--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000512_060--Hb_000175_460 Hb_000035_320 Hb_000035_320 Hb_000512_060--Hb_000035_320 Hb_000125_170 Hb_000125_170 Hb_000181_070--Hb_000125_170 Hb_007416_180 Hb_007416_180 Hb_000181_070--Hb_007416_180 Hb_000181_070--Hb_000230_120 Hb_031527_040 Hb_031527_040 Hb_000181_070--Hb_031527_040 Hb_007532_030 Hb_007532_030 Hb_000181_070--Hb_007532_030 Hb_002105_040--Hb_000175_460 Hb_005348_140 Hb_005348_140 Hb_002105_040--Hb_005348_140 Hb_000510_320 Hb_000510_320 Hb_002105_040--Hb_000510_320 Hb_005663_060 Hb_005663_060 Hb_002105_040--Hb_005663_060 Hb_000876_070 Hb_000876_070 Hb_002105_040--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_002105_040--Hb_004724_080 Hb_000230_120--Hb_000125_170 Hb_001488_070 Hb_001488_070 Hb_000230_120--Hb_001488_070 Hb_000125_130 Hb_000125_130 Hb_000230_120--Hb_000125_130 Hb_000230_120--Hb_009178_030 Hb_008725_260 Hb_008725_260 Hb_009178_030--Hb_008725_260 Hb_009178_030--Hb_007532_030 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_000866_220 Hb_000866_220 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_003862_050 Hb_003862_050 Hb_000175_460--Hb_003862_050 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000175_460--Hb_000876_070 Hb_000976_410 Hb_000976_410 Hb_000035_320--Hb_000976_410 Hb_000671_050 Hb_000671_050 Hb_000035_320--Hb_000671_050 Hb_148644_010 Hb_148644_010 Hb_000035_320--Hb_148644_010 Hb_002835_080 Hb_002835_080 Hb_000035_320--Hb_002835_080 Hb_001538_130 Hb_001538_130 Hb_000035_320--Hb_001538_130 Hb_004032_150 Hb_004032_150 Hb_000035_320--Hb_004032_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4585 24.8113 13.3103 22.7111 22.6419 37.3084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3406 32.9835 44.5131 14.5822 15.233

CAGE analysis