Hb_005348_140

Information

Type -
Description -
Location Contig5348: 124484-127333
Sequence    

Annotation

kegg
ID rcu:RCOM_0711020
description Ubiquinone biosynthesis protein COQ9, mitochondrial precursor, putative
nr
ID XP_012077078.1
description PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
swissprot
ID Q5RJV0
description Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Xenopus tropicalis GN=coq9 PE=2 SV=1
trembl
ID A0A067KCI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07507 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ubiquinone biosynthesis protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47518: 124479-127253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_140 0.0 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
2 Hb_001617_050 0.0570988863 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
3 Hb_002105_040 0.0618054378 - - -
4 Hb_001226_040 0.0691967245 - - protein with unknown function [Ricinus communis]
5 Hb_000175_460 0.0778575921 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_003862_050 0.0781853465 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
7 Hb_000512_060 0.078295743 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
8 Hb_000646_050 0.0783299767 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
9 Hb_002110_150 0.0812784996 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
10 Hb_008725_260 0.0814546699 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
11 Hb_002218_010 0.0819393377 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
12 Hb_009178_030 0.0819891962 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004684_010 0.0821519535 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
14 Hb_004907_110 0.0833401283 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
15 Hb_002660_010 0.0844069253 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
16 Hb_003976_030 0.0850995085 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
17 Hb_002830_030 0.0852103165 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
18 Hb_007416_180 0.0852517544 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
19 Hb_000538_270 0.0854584683 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
20 Hb_126643_020 0.0859568771 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005348_140 Hb_005348_140 Hb_001617_050 Hb_001617_050 Hb_005348_140--Hb_001617_050 Hb_002105_040 Hb_002105_040 Hb_005348_140--Hb_002105_040 Hb_001226_040 Hb_001226_040 Hb_005348_140--Hb_001226_040 Hb_000175_460 Hb_000175_460 Hb_005348_140--Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_010128_080 Hb_010128_080 Hb_001617_050--Hb_010128_080 Hb_000646_050 Hb_000646_050 Hb_001617_050--Hb_000646_050 Hb_050622_050 Hb_050622_050 Hb_001617_050--Hb_050622_050 Hb_000538_270 Hb_000538_270 Hb_001617_050--Hb_000538_270 Hb_001617_050--Hb_001226_040 Hb_002105_040--Hb_000175_460 Hb_000510_320 Hb_000510_320 Hb_002105_040--Hb_000510_320 Hb_005663_060 Hb_005663_060 Hb_002105_040--Hb_005663_060 Hb_000876_070 Hb_000876_070 Hb_002105_040--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_002105_040--Hb_004724_080 Hb_002499_040 Hb_002499_040 Hb_001226_040--Hb_002499_040 Hb_000757_060 Hb_000757_060 Hb_001226_040--Hb_000757_060 Hb_001226_040--Hb_000538_270 Hb_000556_160 Hb_000556_160 Hb_001226_040--Hb_000556_160 Hb_008221_140 Hb_008221_140 Hb_001226_040--Hb_008221_140 Hb_000175_460--Hb_003862_050 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000175_460--Hb_000876_070 Hb_019654_100 Hb_019654_100 Hb_003862_050--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_000181_070 Hb_000181_070 Hb_000512_060--Hb_000181_070 Hb_000512_060--Hb_002105_040 Hb_000230_120 Hb_000230_120 Hb_000512_060--Hb_000230_120 Hb_009178_030 Hb_009178_030 Hb_000512_060--Hb_009178_030 Hb_000512_060--Hb_000175_460 Hb_000035_320 Hb_000035_320 Hb_000512_060--Hb_000035_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.5761 31.3032 21.0477 24.3449 28.2554 36.6434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3353 39.1307 65.0256 31.2224 23.2767

CAGE analysis