Hb_001226_040

Information

Type -
Description -
Location Contig1226: 74485-75534
Sequence    

Annotation

kegg
ID rcu:RCOM_0706530
description protein with unknown function
nr
ID XP_002516110.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q96H78
description Solute carrier family 25 member 44 OS=Homo sapiens GN=SLC25A44 PE=2 SV=1
trembl
ID B9RQU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0706530 PE=3 SV=1
Gene Ontology
ID GO:0016021
description solute carrier family 25 member 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_040 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002499_040 0.0691401949 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
3 Hb_005348_140 0.0691967245 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
4 Hb_000757_060 0.0706798049 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
5 Hb_000538_270 0.0712914744 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
6 Hb_000556_160 0.071810672 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
7 Hb_008221_140 0.0756339417 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
8 Hb_007416_320 0.0758176458 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005618_170 0.0768388034 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
10 Hb_000056_240 0.0771107165 - - PREDICTED: cullin-3A [Jatropha curcas]
11 Hb_002391_310 0.0779474492 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
12 Hb_000189_560 0.078078141 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
13 Hb_002107_030 0.0801956298 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
14 Hb_000866_220 0.080345928 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
15 Hb_035398_020 0.0824296306 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_000185_030 0.0824691688 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
17 Hb_027380_050 0.0826037159 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
18 Hb_001617_050 0.082795005 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
19 Hb_005779_060 0.0832001002 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
20 Hb_000876_070 0.0837506431 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001226_040 Hb_001226_040 Hb_002499_040 Hb_002499_040 Hb_001226_040--Hb_002499_040 Hb_005348_140 Hb_005348_140 Hb_001226_040--Hb_005348_140 Hb_000757_060 Hb_000757_060 Hb_001226_040--Hb_000757_060 Hb_000538_270 Hb_000538_270 Hb_001226_040--Hb_000538_270 Hb_000556_160 Hb_000556_160 Hb_001226_040--Hb_000556_160 Hb_008221_140 Hb_008221_140 Hb_001226_040--Hb_008221_140 Hb_002499_040--Hb_000757_060 Hb_002499_040--Hb_000538_270 Hb_000504_140 Hb_000504_140 Hb_002499_040--Hb_000504_140 Hb_002499_040--Hb_000556_160 Hb_002686_030 Hb_002686_030 Hb_002499_040--Hb_002686_030 Hb_001617_050 Hb_001617_050 Hb_005348_140--Hb_001617_050 Hb_002105_040 Hb_002105_040 Hb_005348_140--Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_005348_140--Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_058999_020 Hb_058999_020 Hb_000757_060--Hb_058999_020 Hb_001242_060 Hb_001242_060 Hb_000757_060--Hb_001242_060 Hb_000757_060--Hb_000538_270 Hb_000317_240 Hb_000317_240 Hb_000757_060--Hb_000317_240 Hb_001248_060 Hb_001248_060 Hb_000757_060--Hb_001248_060 Hb_007416_180 Hb_007416_180 Hb_000538_270--Hb_007416_180 Hb_000538_270--Hb_002686_030 Hb_000289_060 Hb_000289_060 Hb_000538_270--Hb_000289_060 Hb_001005_190 Hb_001005_190 Hb_000538_270--Hb_001005_190 Hb_001157_040 Hb_001157_040 Hb_000538_270--Hb_001157_040 Hb_000556_160--Hb_002686_030 Hb_001341_170 Hb_001341_170 Hb_000556_160--Hb_001341_170 Hb_004724_150 Hb_004724_150 Hb_000556_160--Hb_004724_150 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_005463_040 Hb_005463_040 Hb_008221_140--Hb_005463_040 Hb_000676_180 Hb_000676_180 Hb_008221_140--Hb_000676_180 Hb_002183_090 Hb_002183_090 Hb_008221_140--Hb_002183_090 Hb_000167_140 Hb_000167_140 Hb_008221_140--Hb_000167_140 Hb_000085_050 Hb_000085_050 Hb_008221_140--Hb_000085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2669 11.5282 7.12084 7.97031 9.39472 10.5043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.596 17.5977 17.874 13.9567 8.08718

CAGE analysis