Hb_000167_140

Information

Type -
Description -
Location Contig167: 113655-120673
Sequence    

Annotation

kegg
ID tcc:TCM_043259
description Ras-related small GTP-binding family protein isoform 1
nr
ID XP_012080957.1
description PREDICTED: ras-related protein RABF1 [Jatropha curcas]
swissprot
ID Q9CB01
description Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1 SV=1
trembl
ID A0A067KF37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16153 PE=3 SV=1
Gene Ontology
ID GO:0005769
description ras-related protein rabf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15410: 117954-118138 , PASA_asmbl_15412: 120465-120695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_140 0.0 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
2 Hb_129204_030 0.0630634569 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
3 Hb_008221_140 0.0756382842 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
4 Hb_000608_370 0.0757851527 - - acyl-carrier-protein [Triadica sebifera]
5 Hb_000676_180 0.0792490223 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
6 Hb_008878_030 0.0811936987 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
7 Hb_001140_060 0.0821230722 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
8 Hb_004116_190 0.0824982809 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
9 Hb_000834_270 0.0827699198 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
10 Hb_002301_140 0.0829292113 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
11 Hb_004931_090 0.0830281703 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
12 Hb_003656_070 0.0840797587 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
13 Hb_001047_230 0.0851193925 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_005463_040 0.0854263454 - - signal transducer, putative [Ricinus communis]
15 Hb_029866_060 0.0854266545 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
16 Hb_004586_320 0.0855918595 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
17 Hb_011224_110 0.0863914322 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
18 Hb_000331_080 0.0869038006 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
19 Hb_001832_060 0.0877982781 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
20 Hb_000111_330 0.0890816602 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000167_140 Hb_000167_140 Hb_129204_030 Hb_129204_030 Hb_000167_140--Hb_129204_030 Hb_008221_140 Hb_008221_140 Hb_000167_140--Hb_008221_140 Hb_000608_370 Hb_000608_370 Hb_000167_140--Hb_000608_370 Hb_000676_180 Hb_000676_180 Hb_000167_140--Hb_000676_180 Hb_008878_030 Hb_008878_030 Hb_000167_140--Hb_008878_030 Hb_001140_060 Hb_001140_060 Hb_000167_140--Hb_001140_060 Hb_129204_030--Hb_000608_370 Hb_001047_230 Hb_001047_230 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070 Hb_005463_040 Hb_005463_040 Hb_008221_140--Hb_005463_040 Hb_008221_140--Hb_000676_180 Hb_002183_090 Hb_002183_090 Hb_008221_140--Hb_002183_090 Hb_001226_040 Hb_001226_040 Hb_008221_140--Hb_001226_040 Hb_000085_050 Hb_000085_050 Hb_008221_140--Hb_000085_050 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_000608_370--Hb_001047_230 Hb_000788_090 Hb_000788_090 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_004116_190 Hb_004116_190 Hb_000676_180--Hb_004116_190 Hb_000479_090 Hb_000479_090 Hb_000676_180--Hb_000479_090 Hb_005725_250 Hb_005725_250 Hb_000676_180--Hb_005725_250 Hb_012286_030 Hb_012286_030 Hb_000676_180--Hb_012286_030 Hb_005846_040 Hb_005846_040 Hb_000676_180--Hb_005846_040 Hb_004635_100 Hb_004635_100 Hb_000676_180--Hb_004635_100 Hb_000331_080 Hb_000331_080 Hb_008878_030--Hb_000331_080 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_002686_020 Hb_002686_020 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004048_110 Hb_004048_110 Hb_008878_030--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_006117_070 Hb_006117_070 Hb_001140_060--Hb_006117_070 Hb_012753_160 Hb_012753_160 Hb_001140_060--Hb_012753_160 Hb_008300_010 Hb_008300_010 Hb_001140_060--Hb_008300_010 Hb_000479_010 Hb_000479_010 Hb_001140_060--Hb_000479_010 Hb_101705_030 Hb_101705_030 Hb_001140_060--Hb_101705_030 Hb_001140_060--Hb_008878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1077 7.97421 8.08379 6.66102 10.4987 10.1665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7581 27.9751 21.8047 9.41953 5.6996

CAGE analysis