Hb_002454_030

Information

Type -
Description -
Location Contig2454: 83376-87990
Sequence    

Annotation

kegg
ID tcc:TCM_021836
description Mitochondrial substrate carrier family protein
nr
ID XP_012087988.1
description PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
swissprot
ID Q54MZ4
description Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1
trembl
ID A0A067JKW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25106 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial substrate carrier family protein b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25584: 83481-87987 , PASA_asmbl_25586: 85980-86105
cDNA
(Sanger)
(ID:Location)		 001_L21.ab1: 83481-86116

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002454_030 0.0 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
2 Hb_000608_370 0.0685798211 - - acyl-carrier-protein [Triadica sebifera]
3 Hb_029866_060 0.0766899877 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
4 Hb_001047_230 0.0791008368 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_003656_070 0.0893937652 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
6 Hb_000788_090 0.0899890752 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
7 Hb_129204_030 0.0912543413 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
8 Hb_004931_090 0.0922671021 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
9 Hb_004032_020 0.0938310679 - - hypothetical protein OsI_04644 [Oryza sativa Indica Group]
10 Hb_000167_140 0.0949136197 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
11 Hb_001277_070 0.0968164478 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
12 Hb_008173_090 0.0968901108 - - glutathione peroxidase, putative [Ricinus communis]
13 Hb_000134_330 0.0992269142 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
14 Hb_001300_040 0.1003100346 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
15 Hb_001832_060 0.1007383194 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
16 Hb_007416_030 0.100806123 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
17 Hb_001616_030 0.1008886786 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
18 Hb_002232_440 0.1014761952 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
19 Hb_000258_170 0.1023333208 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
20 Hb_004375_140 0.1048029133 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002454_030 Hb_002454_030 Hb_000608_370 Hb_000608_370 Hb_002454_030--Hb_000608_370 Hb_029866_060 Hb_029866_060 Hb_002454_030--Hb_029866_060 Hb_001047_230 Hb_001047_230 Hb_002454_030--Hb_001047_230 Hb_003656_070 Hb_003656_070 Hb_002454_030--Hb_003656_070 Hb_000788_090 Hb_000788_090 Hb_002454_030--Hb_000788_090 Hb_129204_030 Hb_129204_030 Hb_002454_030--Hb_129204_030 Hb_000608_370--Hb_129204_030 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_000608_370--Hb_001047_230 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_029866_060--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_029866_060--Hb_008173_090 Hb_002284_010 Hb_002284_010 Hb_029866_060--Hb_002284_010 Hb_000111_330 Hb_000111_330 Hb_029866_060--Hb_000111_330 Hb_002163_020 Hb_002163_020 Hb_029866_060--Hb_002163_020 Hb_029866_060--Hb_129204_030 Hb_001047_230--Hb_003656_070 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_001047_230--Hb_129204_030 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_001047_230--Hb_007416_030 Hb_003656_070--Hb_008173_090 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_000788_090--Hb_007416_030 Hb_000788_090--Hb_001047_230 Hb_000788_090--Hb_003656_070 Hb_002110_120 Hb_002110_120 Hb_000788_090--Hb_002110_120 Hb_000788_090--Hb_008173_090 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6453 9.31209 10.2294 4.51165 11.3671 8.9788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1162 39.5589 22.8256 5.5534 5.92987

CAGE analysis