Hb_129204_030

Information

Type -
Description -
Location Contig129204: 22905-26755
Sequence    

Annotation

kegg
ID cmo:103498351
description vacuolar protein sorting-associated protein 32 homolog 2
nr
ID XP_012076817.1
description PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
swissprot
ID Q9SZE4
description Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1
trembl
ID A0A067KC31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07332 PE=4 SV=1
Gene Ontology
ID GO:0000815
description vacuolar protein sorting-associated protein 32 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08806: 22917-26389 , PASA_asmbl_08807: 22865-26733 , PASA_asmbl_08808: 22906-26730 , PASA_asmbl_08809: 12419-26389 , PASA_asmbl_08815: 23828-24228
cDNA
(Sanger)
(ID:Location)		 003_P04.ab1: 22878-25860 , 029_P10.ab1: 22893-26281 , 033_E04.ab1: 22880-25829 , 037_E03.ab1: 22882-26299 , 039_I20.ab1: 22892-24842 , 048_I02.ab1: 22913-26300 , 051_I03.ab1: 22913-25823

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129204_030 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
2 Hb_000608_370 0.0523826507 - - acyl-carrier-protein [Triadica sebifera]
3 Hb_000167_140 0.0630634569 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
4 Hb_001047_230 0.0658275124 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_021409_030 0.0662089948 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
6 Hb_000240_090 0.0688195014 - - Rab5 [Hevea brasiliensis]
7 Hb_001277_070 0.0737065449 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
8 Hb_029866_060 0.0741084196 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
9 Hb_004375_140 0.0751726727 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
10 Hb_003656_070 0.0754882221 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
11 Hb_000111_330 0.0766813713 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
12 Hb_001140_060 0.0792510755 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
13 Hb_000676_180 0.0792819677 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
14 Hb_001832_060 0.0816081118 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
15 Hb_003581_150 0.0818869526 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
16 Hb_000201_120 0.0838860436 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
17 Hb_002163_020 0.0852208285 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
18 Hb_012505_010 0.0852836301 - - mak, putative [Ricinus communis]
19 Hb_004635_100 0.0860291424 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
20 Hb_007416_030 0.0875002588 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]

Gene co-expression network

sample Hb_129204_030 Hb_129204_030 Hb_000608_370 Hb_000608_370 Hb_129204_030--Hb_000608_370 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_001047_230 Hb_001047_230 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_000608_370--Hb_001047_230 Hb_000788_090 Hb_000788_090 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_008221_140 Hb_008221_140 Hb_000167_140--Hb_008221_140 Hb_000167_140--Hb_000608_370 Hb_000676_180 Hb_000676_180 Hb_000167_140--Hb_000676_180 Hb_008878_030 Hb_008878_030 Hb_000167_140--Hb_008878_030 Hb_001140_060 Hb_001140_060 Hb_000167_140--Hb_001140_060 Hb_003656_070 Hb_003656_070 Hb_001047_230--Hb_003656_070 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_001047_230--Hb_007416_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_021409_030--Hb_000608_370 Hb_021409_030--Hb_000240_090 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_012505_010 Hb_012505_010 Hb_001277_070--Hb_012505_010 Hb_001277_070--Hb_000608_370 Hb_011224_110 Hb_011224_110 Hb_001277_070--Hb_011224_110 Hb_003581_150 Hb_003581_150 Hb_001277_070--Hb_003581_150 Hb_153112_020 Hb_153112_020 Hb_001277_070--Hb_153112_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
174.965 89.128 111.777 108.995 127.771 109.161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
227.54 352.531 280.851 78.0882 67.493

CAGE analysis