Hb_004375_140

Information

Type -
Description -
Location Contig4375: 113519-124253
Sequence    

Annotation

kegg
ID rcu:RCOM_1179900
description mitochondrial carrier protein, putative
nr
ID XP_012082829.1
description PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
swissprot
ID O22261
description Nicotinamide adenine dinucleotide transporter 1, chloroplastic OS=Arabidopsis thaliana GN=NDT1 PE=1 SV=2
trembl
ID A0A067JWI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13978 PE=3 SV=1
Gene Ontology
ID GO:0005739
description nicotinamide adenine dinucleotide transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42537: 113547-124225 , PASA_asmbl_42539: 113613-124132 , PASA_asmbl_42540: 119373-119505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_140 0.0 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
2 Hb_021409_030 0.0672522898 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
3 Hb_000103_010 0.069838269 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
4 Hb_001085_120 0.0720034688 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
5 Hb_129204_030 0.0751726727 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
6 Hb_004586_320 0.0759137941 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
7 Hb_000608_370 0.0778031083 - - acyl-carrier-protein [Triadica sebifera]
8 Hb_005511_160 0.081728985 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
9 Hb_012753_160 0.0818117869 - - ara4-interacting protein, putative [Ricinus communis]
10 Hb_012505_010 0.0831642375 - - mak, putative [Ricinus communis]
11 Hb_001484_070 0.084777958 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003077_040 0.0855038228 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
13 Hb_001300_040 0.0878636443 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
14 Hb_002876_120 0.0879983381 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
15 Hb_020301_040 0.0894880083 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
16 Hb_000240_090 0.0911888002 - - Rab5 [Hevea brasiliensis]
17 Hb_000086_280 0.091584113 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
18 Hb_007416_030 0.0917050074 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
19 Hb_001141_030 0.0918022843 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
20 Hb_001979_040 0.0919720143 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_004375_140 Hb_004375_140 Hb_021409_030 Hb_021409_030 Hb_004375_140--Hb_021409_030 Hb_000103_010 Hb_000103_010 Hb_004375_140--Hb_000103_010 Hb_001085_120 Hb_001085_120 Hb_004375_140--Hb_001085_120 Hb_129204_030 Hb_129204_030 Hb_004375_140--Hb_129204_030 Hb_004586_320 Hb_004586_320 Hb_004375_140--Hb_004586_320 Hb_000608_370 Hb_000608_370 Hb_004375_140--Hb_000608_370 Hb_021409_030--Hb_129204_030 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160 Hb_000193_120 Hb_000193_120 Hb_000103_010--Hb_000193_120 Hb_000103_010--Hb_001085_120 Hb_000181_300 Hb_000181_300 Hb_000103_010--Hb_000181_300 Hb_003077_040 Hb_003077_040 Hb_000103_010--Hb_003077_040 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030 Hb_000453_120 Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_129204_030--Hb_000608_370 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_001047_230 Hb_001047_230 Hb_129204_030--Hb_001047_230 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070 Hb_012675_060 Hb_012675_060 Hb_004586_320--Hb_012675_060 Hb_003656_070 Hb_003656_070 Hb_004586_320--Hb_003656_070 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_001998_050 Hb_001998_050 Hb_004586_320--Hb_001998_050 Hb_000574_480 Hb_000574_480 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_000608_370--Hb_001047_230 Hb_000788_090 Hb_000788_090 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2542 6.19976 14.7515 10.0227 13.8084 13.8589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1657 51.0197 37.7172 11.8492 7.37995

CAGE analysis