Hb_000103_010

Information

Type -
Description -
Location Contig103: 11671-14668
Sequence    

Annotation

kegg
ID tcc:TCM_020662
description 20S proteasome beta subunit D1
nr
ID ADR70865.1
description 20S proteasome beta subunit D2 [Hevea brasiliensis]
swissprot
ID O23714
description Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1
trembl
ID V5IV16
description Proteasome subunit beta type OS=Hevea brasiliensis GN=PBD2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-2-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01170: 11741-14651 , PASA_asmbl_01172: 13739-14111
cDNA
(Sanger)
(ID:Location)		 034_N02.ab1: 11801-14651

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_010 0.0 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
2 Hb_000193_120 0.0533647907 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
3 Hb_001085_120 0.0618131009 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
4 Hb_000181_300 0.0642938125 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
5 Hb_004375_140 0.069838269 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
6 Hb_003077_040 0.0762614825 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
7 Hb_005181_030 0.0791526603 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
8 Hb_000012_100 0.0813788848 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
9 Hb_004586_320 0.0818079876 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
10 Hb_001396_100 0.0826507387 - - DNA binding protein, putative [Ricinus communis]
11 Hb_001776_160 0.0843973399 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
12 Hb_000417_360 0.085760938 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
13 Hb_001512_080 0.086942177 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
14 Hb_143766_010 0.0875257496 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
15 Hb_005391_030 0.0879587412 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
16 Hb_001484_070 0.0892902902 - - conserved hypothetical protein [Ricinus communis]
17 Hb_148200_010 0.0895232542 - - hypothetical protein 33 [Hevea brasiliensis]
18 Hb_000224_140 0.0897324159 - - ribonuclease z, chloroplast, putative [Ricinus communis]
19 Hb_002374_390 0.090245217 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
20 Hb_017948_010 0.091758189 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000103_010 Hb_000103_010 Hb_000193_120 Hb_000193_120 Hb_000103_010--Hb_000193_120 Hb_001085_120 Hb_001085_120 Hb_000103_010--Hb_001085_120 Hb_000181_300 Hb_000181_300 Hb_000103_010--Hb_000181_300 Hb_004375_140 Hb_004375_140 Hb_000103_010--Hb_004375_140 Hb_003077_040 Hb_003077_040 Hb_000103_010--Hb_003077_040 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030 Hb_000193_120--Hb_000181_300 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_000453_120 Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_000181_300--Hb_000012_100 Hb_003053_030 Hb_003053_030 Hb_000181_300--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_021409_030 Hb_021409_030 Hb_004375_140--Hb_021409_030 Hb_004375_140--Hb_001085_120 Hb_129204_030 Hb_129204_030 Hb_004375_140--Hb_129204_030 Hb_004586_320 Hb_004586_320 Hb_004375_140--Hb_004586_320 Hb_000608_370 Hb_000608_370 Hb_004375_140--Hb_000608_370 Hb_003077_040--Hb_001484_070 Hb_003077_040--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_003077_040--Hb_000261_140 Hb_000086_280 Hb_000086_280 Hb_003077_040--Hb_000086_280 Hb_003077_040--Hb_000453_120 Hb_001279_360 Hb_001279_360 Hb_005181_030--Hb_001279_360 Hb_004459_040 Hb_004459_040 Hb_005181_030--Hb_004459_040 Hb_002687_170 Hb_002687_170 Hb_005181_030--Hb_002687_170 Hb_094608_010 Hb_094608_010 Hb_005181_030--Hb_094608_010 Hb_004157_030 Hb_004157_030 Hb_005181_030--Hb_004157_030 Hb_005181_030--Hb_001085_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.109 12.3413 35.8133 22.9358 24.7958 29.2179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.9591 117.873 80.3294 38.8032 21.2667

CAGE analysis