Hb_000181_300

Information

Type -
Description -
Location Contig181: 237326-242768
Sequence    

Annotation

kegg
ID tcc:TCM_031522
description RNA-binding S4 domain-containing protein
nr
ID XP_012092737.1
description PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
swissprot
ID P71020
description Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3 SV=1
trembl
ID A0A067JBZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08637 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna-binding s4 domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17528: 237328-242650 , PASA_asmbl_17530: 240246-240667
cDNA
(Sanger)
(ID:Location)		 019_G07.ab1: 242440-242650

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_300 0.0 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
2 Hb_000193_120 0.0508886747 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
3 Hb_000012_100 0.0519464222 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
4 Hb_003053_030 0.0559853715 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_001191_090 0.0614034838 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
6 Hb_002374_390 0.0615401058 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
7 Hb_000103_010 0.0642938125 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
8 Hb_000364_030 0.0693357349 - - RNA binding protein, putative [Ricinus communis]
9 Hb_148200_010 0.0699034469 - - hypothetical protein 33 [Hevea brasiliensis]
10 Hb_001634_040 0.0724387233 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
11 Hb_017948_010 0.0736472186 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
12 Hb_004156_040 0.0759233493 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
13 Hb_001633_030 0.0759323242 - - -
14 Hb_006573_220 0.076911986 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
15 Hb_001396_100 0.0770951523 - - DNA binding protein, putative [Ricinus communis]
16 Hb_001085_120 0.0771368481 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
17 Hb_000905_180 0.0781381263 - - 60S ribosomal protein L31A [Hevea brasiliensis]
18 Hb_000224_140 0.079252526 - - ribonuclease z, chloroplast, putative [Ricinus communis]
19 Hb_002097_060 0.0797968485 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_003376_030 0.0806333372 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_300 Hb_000181_300 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_003053_030 Hb_003053_030 Hb_000181_300--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_000193_120--Hb_000103_010 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_000012_100--Hb_001634_040 Hb_000012_100--Hb_004156_040 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_003053_030--Hb_001191_090 Hb_148200_010 Hb_148200_010 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_001191_090--Hb_148200_010 Hb_001191_090--Hb_006573_220 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_002374_390--Hb_001016_090 Hb_002374_390--Hb_000364_030 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170 Hb_003185_050 Hb_003185_050 Hb_002374_390--Hb_003185_050 Hb_000905_180 Hb_000905_180 Hb_002374_390--Hb_000905_180 Hb_001085_120 Hb_001085_120 Hb_000103_010--Hb_001085_120 Hb_004375_140 Hb_004375_140 Hb_000103_010--Hb_004375_140 Hb_003077_040 Hb_003077_040 Hb_000103_010--Hb_003077_040 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3011 6.31547 10.5842 12.3762 8.90764 14.1061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4249 55.0439 35.1858 14.4542 9.65004

CAGE analysis