Hb_000905_180

Information

Type -
Description -
Location Contig905: 179746-181374
Sequence    

Annotation

kegg
ID cit:102625183
description 60S ribosomal protein L31-like
nr
ID ADR71260.1
description 60S ribosomal protein L31A [Hevea brasiliensis]
swissprot
ID Q9M573
description 60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1
trembl
ID I3NMM3
description 60S ribosomal protein L31A OS=Hevea brasiliensis GN=RPL31A PE=2 SV=1
Gene Ontology
ID GO:0030529
description 60s ribosomal protein l31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62010: 179523-181395 , PASA_asmbl_62011: 180196-180827
cDNA
(Sanger)
(ID:Location)		 014_B15.ab1: 179610-181393 , 020_D07.ab1: 179583-181389 , 024_D11.ab1: 179891-181389 , 026_F20.ab1: 179924-181393 , 035_O18.ab1: 179610-181389 , 040_N13.ab1: 179613-181395

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_180 0.0 - - 60S ribosomal protein L31A [Hevea brasiliensis]
2 Hb_000163_130 0.0690229108 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
3 Hb_000236_150 0.0699981192 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
4 Hb_001016_090 0.0743626581 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
5 Hb_005474_060 0.0763427712 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
6 Hb_003185_050 0.0776843689 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
7 Hb_002374_390 0.0777776986 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
8 Hb_000181_300 0.0781381263 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
9 Hb_000881_080 0.0785172502 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001780_050 0.0785997902 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
11 Hb_003053_030 0.0791182949 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
12 Hb_007304_070 0.0796092019 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
13 Hb_000389_080 0.0799124271 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
14 Hb_001634_040 0.0800987427 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
15 Hb_000364_030 0.080277207 - - RNA binding protein, putative [Ricinus communis]
16 Hb_000349_290 0.0823016983 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
17 Hb_003994_040 0.0876829163 - - -
18 Hb_000224_090 0.0892893158 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
19 Hb_001863_400 0.0902726377 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
20 Hb_007575_070 0.0907301953 - - Histone H3.2 [Glycine soja]

Gene co-expression network

sample Hb_000905_180 Hb_000905_180 Hb_000163_130 Hb_000163_130 Hb_000905_180--Hb_000163_130 Hb_000236_150 Hb_000236_150 Hb_000905_180--Hb_000236_150 Hb_001016_090 Hb_001016_090 Hb_000905_180--Hb_001016_090 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_003185_050 Hb_003185_050 Hb_000905_180--Hb_003185_050 Hb_002374_390 Hb_002374_390 Hb_000905_180--Hb_002374_390 Hb_001780_050 Hb_001780_050 Hb_000163_130--Hb_001780_050 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_004754_070 Hb_004754_070 Hb_000163_130--Hb_004754_070 Hb_000163_130--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000163_130--Hb_003053_030 Hb_005914_200 Hb_005914_200 Hb_000236_150--Hb_005914_200 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_012539_020 Hb_012539_020 Hb_000236_150--Hb_012539_020 Hb_032260_030 Hb_032260_030 Hb_001016_090--Hb_032260_030 Hb_001016_090--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_003994_040 Hb_003994_040 Hb_005474_060--Hb_003994_040 Hb_002687_170 Hb_002687_170 Hb_005474_060--Hb_002687_170 Hb_011644_030 Hb_011644_030 Hb_005474_060--Hb_011644_030 Hb_005474_060--Hb_003053_030 Hb_000181_300 Hb_000181_300 Hb_005474_060--Hb_000181_300 Hb_000349_290 Hb_000349_290 Hb_003185_050--Hb_000349_290 Hb_152910_020 Hb_152910_020 Hb_003185_050--Hb_152910_020 Hb_003185_050--Hb_002374_390 Hb_003326_020 Hb_003326_020 Hb_003185_050--Hb_003326_020 Hb_003185_050--Hb_001016_090 Hb_002374_390--Hb_000181_300 Hb_000364_030 Hb_000364_030 Hb_002374_390--Hb_000364_030 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.525 112.629 102.87 151.237 99.5621 257.86
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
578.263 969.11 493.272 203.501 108.872

CAGE analysis