Hb_000364_030

Information

Type -
Description -
Location Contig364: 21700-26302
Sequence    

Annotation

kegg
ID rcu:RCOM_0250010
description RNA binding protein, putative
nr
ID XP_002534389.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q9W6I1
description RNA-binding protein with multiple splicing OS=Gallus gallus GN=RBPMS PE=2 SV=1
trembl
ID B9T820
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0250010 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37429: 22024-26405 , PASA_asmbl_37430: 25408-26245 , PASA_asmbl_37431: 22214-22511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_030 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_003053_030 0.0658478155 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
3 Hb_002374_390 0.0682192726 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
4 Hb_000181_300 0.0693357349 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
5 Hb_001191_090 0.0718401863 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
6 Hb_148200_010 0.0746771348 - - hypothetical protein 33 [Hevea brasiliensis]
7 Hb_011644_030 0.0775831819 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
8 Hb_000024_030 0.0800440771 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
9 Hb_000905_180 0.080277207 - - 60S ribosomal protein L31A [Hevea brasiliensis]
10 Hb_000389_080 0.0827628028 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
11 Hb_005731_170 0.0833030691 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
12 Hb_004449_200 0.0847634718 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
13 Hb_002107_120 0.0853597853 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
14 Hb_007304_070 0.0863366545 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
15 Hb_001396_100 0.0869021068 - - DNA binding protein, putative [Ricinus communis]
16 Hb_026048_070 0.087009512 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
17 Hb_001016_090 0.087644316 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
18 Hb_002631_020 0.0879439303 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
19 Hb_000221_150 0.0881141466 - - -
20 Hb_004156_040 0.0890277768 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]

Gene co-expression network

sample Hb_000364_030 Hb_000364_030 Hb_003053_030 Hb_003053_030 Hb_000364_030--Hb_003053_030 Hb_002374_390 Hb_002374_390 Hb_000364_030--Hb_002374_390 Hb_000181_300 Hb_000181_300 Hb_000364_030--Hb_000181_300 Hb_001191_090 Hb_001191_090 Hb_000364_030--Hb_001191_090 Hb_148200_010 Hb_148200_010 Hb_000364_030--Hb_148200_010 Hb_011644_030 Hb_011644_030 Hb_000364_030--Hb_011644_030 Hb_003053_030--Hb_001191_090 Hb_003053_030--Hb_000181_300 Hb_003053_030--Hb_148200_010 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_002374_390--Hb_000181_300 Hb_001016_090 Hb_001016_090 Hb_002374_390--Hb_001016_090 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170 Hb_003185_050 Hb_003185_050 Hb_002374_390--Hb_003185_050 Hb_000905_180 Hb_000905_180 Hb_002374_390--Hb_000905_180 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_000181_300--Hb_001191_090 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_011644_030--Hb_003994_040 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.65438 6.30886 6.3545 10.5992 8.05233 16.1362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.3528 42.1052 26.0021 12.7714 7.35577

CAGE analysis