Hb_026048_070

Information

Type -
Description -
Location Contig26048: 96950-106627
Sequence    

Annotation

kegg
ID rcu:RCOM_1689390
description 50S ribosomal protein L25, putative
nr
ID XP_012086805.1
description PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
swissprot
ID Q1GSP2
description 50S ribosomal protein L25 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=rplY PE=3 SV=1
trembl
ID A0A067K0P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20520 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27159: 97449-106541
cDNA
(Sanger)
(ID:Location)		 028_I12.ab1: 97826-106541

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026048_070 0.0 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
2 Hb_011644_030 0.0752709194 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
3 Hb_003623_050 0.0776558518 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001016_090 0.0785493327 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
5 Hb_003053_030 0.0818295528 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
6 Hb_148200_010 0.0846627532 - - hypothetical protein 33 [Hevea brasiliensis]
7 Hb_001279_360 0.0860068859 - - protein with unknown function [Ricinus communis]
8 Hb_000364_030 0.087009512 - - RNA binding protein, putative [Ricinus communis]
9 Hb_004567_120 0.0890041393 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
10 Hb_002107_120 0.0896129753 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
11 Hb_004156_040 0.0917223503 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
12 Hb_003994_040 0.0923904275 - - -
13 Hb_000389_080 0.0930469491 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
14 Hb_000193_120 0.0970974691 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
15 Hb_027380_180 0.0976507655 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
16 Hb_009421_040 0.0977244733 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
17 Hb_000181_300 0.0982457676 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
18 Hb_002925_030 0.0984147609 - - 40S ribosomal protein S16B [Hevea brasiliensis]
19 Hb_001700_020 0.0985628136 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
20 Hb_017948_010 0.0985778972 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_026048_070 Hb_026048_070 Hb_011644_030 Hb_011644_030 Hb_026048_070--Hb_011644_030 Hb_003623_050 Hb_003623_050 Hb_026048_070--Hb_003623_050 Hb_001016_090 Hb_001016_090 Hb_026048_070--Hb_001016_090 Hb_003053_030 Hb_003053_030 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_003623_050--Hb_000136_170 Hb_005357_130 Hb_005357_130 Hb_003623_050--Hb_005357_130 Hb_000086_550 Hb_000086_550 Hb_003623_050--Hb_000086_550 Hb_003623_050--Hb_011644_030 Hb_001505_020 Hb_001505_020 Hb_003623_050--Hb_001505_020 Hb_032260_030 Hb_032260_030 Hb_001016_090--Hb_032260_030 Hb_002374_390 Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_003053_030--Hb_148200_010 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003053_030--Hb_003994_040 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_148200_010--Hb_004156_040 Hb_148200_010--Hb_001279_360 Hb_017948_010 Hb_017948_010 Hb_001279_360--Hb_017948_010 Hb_001279_360--Hb_003053_030 Hb_005181_030 Hb_005181_030 Hb_001279_360--Hb_005181_030 Hb_156947_010 Hb_156947_010 Hb_001279_360--Hb_156947_010 Hb_001279_360--Hb_001433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.10794 4.04102 4.67055 6.82938 7.75304 14.274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6506 44.2589 22.1003 17.7458 9.85513

CAGE analysis