Hb_001279_360

Information

Type -
Description -
Location Contig1279: 320665-323931
Sequence    

Annotation

kegg
ID rcu:RCOM_0531760
description protein with unknown function
nr
ID XP_002526954.1
description protein with unknown function [Ricinus communis]
swissprot
ID P0CQ26
description Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATP23 PE=3 SV=1
trembl
ID B9SLT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531760 PE=4 SV=1
Gene Ontology
ID GO:0004222
description mitochondrial inner membrane protease atp23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08611: 320777-323892 , PASA_asmbl_08612: 324161-324335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_360 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_148200_010 0.0647826745 - - hypothetical protein 33 [Hevea brasiliensis]
3 Hb_017948_010 0.0666777862 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
4 Hb_003053_030 0.0681853257 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_005181_030 0.0683145185 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
6 Hb_156947_010 0.0733425395 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
7 Hb_001433_050 0.0737535942 - - 60S ribosomal protein L18, putative [Ricinus communis]
8 Hb_001191_090 0.0791190859 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
9 Hb_000173_220 0.0791354109 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
10 Hb_004375_100 0.0792505435 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
11 Hb_005883_100 0.0824005032 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
12 Hb_003994_040 0.0824262538 - - -
13 Hb_012675_060 0.0833046687 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
14 Hb_002835_320 0.0838486117 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_026048_070 0.0860068859 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
16 Hb_001505_020 0.0866889369 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
17 Hb_000270_370 0.0868405467 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
18 Hb_012753_160 0.0869966346 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_002918_200 0.0872435542 - - -
20 Hb_011644_030 0.0875107159 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001279_360 Hb_001279_360 Hb_148200_010 Hb_148200_010 Hb_001279_360--Hb_148200_010 Hb_017948_010 Hb_017948_010 Hb_001279_360--Hb_017948_010 Hb_003053_030 Hb_003053_030 Hb_001279_360--Hb_003053_030 Hb_005181_030 Hb_005181_030 Hb_001279_360--Hb_005181_030 Hb_156947_010 Hb_156947_010 Hb_001279_360--Hb_156947_010 Hb_001433_050 Hb_001433_050 Hb_001279_360--Hb_001433_050 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_148200_010--Hb_003053_030 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_000173_220 Hb_000173_220 Hb_017948_010--Hb_000173_220 Hb_003994_040 Hb_003994_040 Hb_017948_010--Hb_003994_040 Hb_153112_030 Hb_153112_030 Hb_017948_010--Hb_153112_030 Hb_001083_020 Hb_001083_020 Hb_017948_010--Hb_001083_020 Hb_017948_010--Hb_003053_030 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_003053_030--Hb_004156_040 Hb_003053_030--Hb_003994_040 Hb_004459_040 Hb_004459_040 Hb_005181_030--Hb_004459_040 Hb_002687_170 Hb_002687_170 Hb_005181_030--Hb_002687_170 Hb_094608_010 Hb_094608_010 Hb_005181_030--Hb_094608_010 Hb_004157_030 Hb_004157_030 Hb_005181_030--Hb_004157_030 Hb_001085_120 Hb_001085_120 Hb_005181_030--Hb_001085_120 Hb_009686_030 Hb_009686_030 Hb_156947_010--Hb_009686_030 Hb_002701_240 Hb_002701_240 Hb_156947_010--Hb_002701_240 Hb_004375_100 Hb_004375_100 Hb_156947_010--Hb_004375_100 Hb_010068_020 Hb_010068_020 Hb_156947_010--Hb_010068_020 Hb_008878_030 Hb_008878_030 Hb_156947_010--Hb_008878_030 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.276 3.0456 5.75054 10.2704 11.214 15.2715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.2115 45.9056 24.2052 15.5551 8.56553

CAGE analysis