Hb_002701_240

Information

Type -
Description -
Location Contig2701: 209906-212784
Sequence    

Annotation

kegg
ID rcu:RCOM_0917410
description hypothetical protein
nr
ID XP_012088050.1
description PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
swissprot
ID Q96MD7
description Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1 SV=1
trembl
ID A0A067JNC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25579 PE=4 SV=1
Gene Ontology
ID GO:0000398
description dna helicase ino80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28347: 210349-212811
cDNA
(Sanger)
(ID:Location)		 052_G07.ab1: 210385-212811

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_240 0.0 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
2 Hb_004375_100 0.0616508855 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
3 Hb_156947_010 0.0699078113 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
4 Hb_011150_010 0.0741211546 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
5 Hb_005618_140 0.0771714328 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
6 Hb_027073_040 0.0781388804 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
7 Hb_010068_020 0.084117333 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
8 Hb_033834_040 0.087988581 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005997_010 0.0892491839 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
10 Hb_000580_080 0.0895246205 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
11 Hb_003734_140 0.0909201547 - - conserved hypothetical protein [Ricinus communis]
12 Hb_089839_020 0.0923423626 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
13 Hb_001279_360 0.0931889613 - - protein with unknown function [Ricinus communis]
14 Hb_000227_230 0.0943424417 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
15 Hb_008878_030 0.0948710453 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
16 Hb_000270_370 0.0959596777 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
17 Hb_000696_310 0.0959937048 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
18 Hb_003020_230 0.0966342453 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
19 Hb_002183_090 0.0969486149 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
20 Hb_001477_110 0.0970863482 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002701_240 Hb_002701_240 Hb_004375_100 Hb_004375_100 Hb_002701_240--Hb_004375_100 Hb_156947_010 Hb_156947_010 Hb_002701_240--Hb_156947_010 Hb_011150_010 Hb_011150_010 Hb_002701_240--Hb_011150_010 Hb_005618_140 Hb_005618_140 Hb_002701_240--Hb_005618_140 Hb_027073_040 Hb_027073_040 Hb_002701_240--Hb_027073_040 Hb_010068_020 Hb_010068_020 Hb_002701_240--Hb_010068_020 Hb_004375_100--Hb_010068_020 Hb_002713_070 Hb_002713_070 Hb_004375_100--Hb_002713_070 Hb_001814_050 Hb_001814_050 Hb_004375_100--Hb_001814_050 Hb_004375_100--Hb_156947_010 Hb_001505_020 Hb_001505_020 Hb_004375_100--Hb_001505_020 Hb_009686_030 Hb_009686_030 Hb_156947_010--Hb_009686_030 Hb_001279_360 Hb_001279_360 Hb_156947_010--Hb_001279_360 Hb_156947_010--Hb_010068_020 Hb_008878_030 Hb_008878_030 Hb_156947_010--Hb_008878_030 Hb_011150_010--Hb_004375_100 Hb_033834_040 Hb_033834_040 Hb_011150_010--Hb_033834_040 Hb_002043_130 Hb_002043_130 Hb_011150_010--Hb_002043_130 Hb_011150_010--Hb_010068_020 Hb_000270_370 Hb_000270_370 Hb_011150_010--Hb_000270_370 Hb_002311_350 Hb_002311_350 Hb_005618_140--Hb_002311_350 Hb_000487_250 Hb_000487_250 Hb_005618_140--Hb_000487_250 Hb_001477_110 Hb_001477_110 Hb_005618_140--Hb_001477_110 Hb_000380_190 Hb_000380_190 Hb_005618_140--Hb_000380_190 Hb_089839_020 Hb_089839_020 Hb_005618_140--Hb_089839_020 Hb_002759_060 Hb_002759_060 Hb_027073_040--Hb_002759_060 Hb_027073_040--Hb_000270_370 Hb_027073_040--Hb_033834_040 Hb_000028_140 Hb_000028_140 Hb_027073_040--Hb_000028_140 Hb_000058_060 Hb_000058_060 Hb_027073_040--Hb_000058_060 Hb_000696_310 Hb_000696_310 Hb_027073_040--Hb_000696_310 Hb_002056_050 Hb_002056_050 Hb_010068_020--Hb_002056_050 Hb_000384_100 Hb_000384_100 Hb_010068_020--Hb_000384_100 Hb_010068_020--Hb_002043_130 Hb_004216_050 Hb_004216_050 Hb_010068_020--Hb_004216_050 Hb_004157_030 Hb_004157_030 Hb_010068_020--Hb_004157_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1813 5.78987 7.00671 8.74244 16.4821 26.3645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8876 49.314 22.6872 24.0929 10.6018

CAGE analysis