Hb_000696_310

Information

Type -
Description -
Location Contig696: 219660-222500
Sequence    

Annotation

kegg
ID rcu:RCOM_1378650
description 40S ribosomal protein S4, putative
nr
ID XP_012080847.1
description PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
swissprot
ID Q8VYK6
description 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2
trembl
ID A0A067K6J4
description 40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54605: 219606-222727 , PASA_asmbl_54606: 219668-219792 , PASA_asmbl_54607: 219991-220225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_310 0.0 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
2 Hb_027073_040 0.0742845933 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
3 Hb_002759_060 0.0827121043 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
4 Hb_155764_010 0.0896801752 - - -
5 Hb_000444_050 0.0919420907 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
6 Hb_000270_370 0.0922978195 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
7 Hb_000260_810 0.0928656652 - - -
8 Hb_000979_230 0.093246647 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
9 Hb_006400_030 0.0938743245 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
10 Hb_003032_040 0.0938746781 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
11 Hb_061090_010 0.093990186 - - RAN BINDING protein 1 [Populus trichocarpa]
12 Hb_002769_050 0.0943691595 - - PREDICTED: endophilin-A1 [Jatropha curcas]
13 Hb_001512_030 0.0944271574 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
14 Hb_001691_210 0.0947527067 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
15 Hb_004678_050 0.0954758884 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
16 Hb_001006_190 0.0957129735 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
17 Hb_002701_240 0.0959937048 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
18 Hb_000613_140 0.0968579728 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
19 Hb_001833_110 0.0973396976 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009954_040 0.0992038078 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000696_310 Hb_000696_310 Hb_027073_040 Hb_027073_040 Hb_000696_310--Hb_027073_040 Hb_002759_060 Hb_002759_060 Hb_000696_310--Hb_002759_060 Hb_155764_010 Hb_155764_010 Hb_000696_310--Hb_155764_010 Hb_000444_050 Hb_000444_050 Hb_000696_310--Hb_000444_050 Hb_000270_370 Hb_000270_370 Hb_000696_310--Hb_000270_370 Hb_000260_810 Hb_000260_810 Hb_000696_310--Hb_000260_810 Hb_027073_040--Hb_002759_060 Hb_027073_040--Hb_000270_370 Hb_033834_040 Hb_033834_040 Hb_027073_040--Hb_033834_040 Hb_000028_140 Hb_000028_140 Hb_027073_040--Hb_000028_140 Hb_000058_060 Hb_000058_060 Hb_027073_040--Hb_000058_060 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_002759_060--Hb_000058_060 Hb_003097_210 Hb_003097_210 Hb_155764_010--Hb_003097_210 Hb_116898_010 Hb_116898_010 Hb_155764_010--Hb_116898_010 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_000010_470 Hb_000010_470 Hb_155764_010--Hb_000010_470 Hb_000087_020 Hb_000087_020 Hb_000444_050--Hb_000087_020 Hb_000205_270 Hb_000205_270 Hb_000444_050--Hb_000205_270 Hb_000086_070 Hb_000086_070 Hb_000444_050--Hb_000086_070 Hb_005997_010 Hb_005997_010 Hb_000444_050--Hb_005997_010 Hb_023732_070 Hb_023732_070 Hb_000444_050--Hb_023732_070 Hb_000329_310 Hb_000329_310 Hb_000444_050--Hb_000329_310 Hb_000221_160 Hb_000221_160 Hb_000270_370--Hb_000221_160 Hb_000373_120 Hb_000373_120 Hb_000270_370--Hb_000373_120 Hb_000979_230 Hb_000979_230 Hb_000270_370--Hb_000979_230 Hb_000671_090 Hb_000671_090 Hb_000270_370--Hb_000671_090 Hb_000270_370--Hb_033834_040 Hb_022181_020 Hb_022181_020 Hb_000260_810--Hb_022181_020 Hb_181600_010 Hb_181600_010 Hb_000260_810--Hb_181600_010 Hb_048476_050 Hb_048476_050 Hb_000260_810--Hb_048476_050 Hb_005183_120 Hb_005183_120 Hb_000260_810--Hb_005183_120 Hb_000260_810--Hb_002301_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
381.886 96.1781 140.542 167.625 172.86 424.017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
474.281 520.859 469.859 366.508 149.966

CAGE analysis