Hb_048476_050

Information

Type -
Description -
Location Contig48476: 35912-37046
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13510g
description POPTRDRAFT_564677; semialdehyde dehydrogenase family protein
nr
ID XP_002311534.1
description semialdehyde dehydrogenase family protein [Populus trichocarpa]
swissprot
ID O67716
description Aspartate-semialdehyde dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=asd PE=3 SV=1
trembl
ID B9HJH4
description Semialdehyde dehydrogenase family protein OS=Populus trichocarpa GN=POPTR_0008s13510g PE=3 SV=1
Gene Ontology
ID GO:0005739
description aspartate-semialdehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44939: 27814-36284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_050 0.0 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
2 Hb_181600_010 0.0794640398 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
3 Hb_116898_010 0.1050028026 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
4 Hb_155764_010 0.1083604484 - - -
5 Hb_010560_040 0.1085445854 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
6 Hb_000010_470 0.1093990452 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
7 Hb_003097_210 0.109735366 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
8 Hb_002842_020 0.1107945027 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
9 Hb_000482_090 0.1115035877 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
10 Hb_000260_810 0.1116106718 - - -
11 Hb_000602_010 0.1156577941 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
12 Hb_148209_110 0.1161144554 - - putative polyol transported protein 2 [Hevea brasiliensis]
13 Hb_093458_050 0.1180755556 - - glutathione reductase [Hevea brasiliensis]
14 Hb_011953_020 0.1208437465 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
15 Hb_001360_050 0.1217756816 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
16 Hb_001688_020 0.1242071475 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
17 Hb_003226_280 0.1269882382 - - PREDICTED: peter Pan-like protein [Populus euphratica]
18 Hb_000363_200 0.1285329752 - - 40S ribosomal protein S8, putative [Ricinus communis]
19 Hb_000239_010 0.1294813678 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_002835_100 0.1307669856 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_048476_050 Hb_048476_050 Hb_181600_010 Hb_181600_010 Hb_048476_050--Hb_181600_010 Hb_116898_010 Hb_116898_010 Hb_048476_050--Hb_116898_010 Hb_155764_010 Hb_155764_010 Hb_048476_050--Hb_155764_010 Hb_010560_040 Hb_010560_040 Hb_048476_050--Hb_010560_040 Hb_000010_470 Hb_000010_470 Hb_048476_050--Hb_000010_470 Hb_003097_210 Hb_003097_210 Hb_048476_050--Hb_003097_210 Hb_181600_010--Hb_003097_210 Hb_001545_080 Hb_001545_080 Hb_181600_010--Hb_001545_080 Hb_001688_020 Hb_001688_020 Hb_181600_010--Hb_001688_020 Hb_181600_010--Hb_155764_010 Hb_000260_810 Hb_000260_810 Hb_181600_010--Hb_000260_810 Hb_000239_010 Hb_000239_010 Hb_116898_010--Hb_000239_010 Hb_116898_010--Hb_155764_010 Hb_027073_040 Hb_027073_040 Hb_116898_010--Hb_027073_040 Hb_002471_080 Hb_002471_080 Hb_116898_010--Hb_002471_080 Hb_003226_280 Hb_003226_280 Hb_116898_010--Hb_003226_280 Hb_012675_060 Hb_012675_060 Hb_116898_010--Hb_012675_060 Hb_155764_010--Hb_003097_210 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_155764_010--Hb_000010_470 Hb_000742_110 Hb_000742_110 Hb_010560_040--Hb_000742_110 Hb_010560_040--Hb_003097_210 Hb_000865_070 Hb_000865_070 Hb_010560_040--Hb_000865_070 Hb_010560_040--Hb_155764_010 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230 Hb_148209_110 Hb_148209_110 Hb_000010_470--Hb_148209_110 Hb_000010_460 Hb_000010_460 Hb_000010_470--Hb_000010_460 Hb_002216_040 Hb_002216_040 Hb_000010_470--Hb_002216_040 Hb_004678_050 Hb_004678_050 Hb_000010_470--Hb_004678_050 Hb_006400_030 Hb_006400_030 Hb_000010_470--Hb_006400_030 Hb_003097_210--Hb_001688_020 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_003097_210--Hb_000865_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.971934 0.209855 0.458625 0.537042 0.983417 1.38115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39052 2.09368 3.05557 2.34017 0.783444

CAGE analysis