Hb_001545_080

Information

Type -
Description -
Location Contig1545: 103420-111212
Sequence    

Annotation

kegg
ID rcu:RCOM_0297060
description pseudouridylate synthase, putative (EC:5.4.99.12)
nr
ID XP_012084513.1
description PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
swissprot
ID Q9JI38
description tRNA pseudouridine(38/39) synthase OS=Mus musculus GN=Pus3 PE=1 SV=2
trembl
ID A0A067JUE1
description tRNA pseudouridine synthase OS=Jatropha curcas GN=JCGZ_20152 PE=3 SV=1
Gene Ontology
ID GO:0003723
description trna pseudouridine(38 39) synthase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13356: 107850-110313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_080 0.0 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
2 Hb_003050_220 0.0764148653 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
3 Hb_155159_030 0.0812138098 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
4 Hb_127552_030 0.083564857 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_006907_130 0.0838344909 - - unnamed protein product [Coffea canephora]
6 Hb_005183_120 0.0841964126 - - protein translocase, putative [Ricinus communis]
7 Hb_001006_190 0.0866284442 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
8 Hb_031340_050 0.0876931464 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
9 Hb_089995_010 0.0920133178 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
10 Hb_001579_220 0.09377464 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
11 Hb_015934_070 0.0952106114 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
12 Hb_011671_180 0.0960951899 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
13 Hb_002000_080 0.0971894304 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
14 Hb_181600_010 0.0987595374 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
15 Hb_000015_040 0.1016190224 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
16 Hb_000010_460 0.1027878515 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
17 Hb_001959_210 0.103497731 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
18 Hb_001902_140 0.1038532299 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
19 Hb_001369_690 0.1043391262 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
20 Hb_012098_080 0.104467804 - - KOM, putative [Ricinus communis]

Gene co-expression network

sample Hb_001545_080 Hb_001545_080 Hb_003050_220 Hb_003050_220 Hb_001545_080--Hb_003050_220 Hb_155159_030 Hb_155159_030 Hb_001545_080--Hb_155159_030 Hb_127552_030 Hb_127552_030 Hb_001545_080--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_001545_080--Hb_006907_130 Hb_005183_120 Hb_005183_120 Hb_001545_080--Hb_005183_120 Hb_001006_190 Hb_001006_190 Hb_001545_080--Hb_001006_190 Hb_001579_220 Hb_001579_220 Hb_003050_220--Hb_001579_220 Hb_001902_140 Hb_001902_140 Hb_003050_220--Hb_001902_140 Hb_000015_040 Hb_000015_040 Hb_003050_220--Hb_000015_040 Hb_032202_190 Hb_032202_190 Hb_003050_220--Hb_032202_190 Hb_002107_030 Hb_002107_030 Hb_003050_220--Hb_002107_030 Hb_000958_110 Hb_000958_110 Hb_003050_220--Hb_000958_110 Hb_155159_030--Hb_127552_030 Hb_105123_010 Hb_105123_010 Hb_155159_030--Hb_105123_010 Hb_015934_070 Hb_015934_070 Hb_155159_030--Hb_015934_070 Hb_032258_030 Hb_032258_030 Hb_155159_030--Hb_032258_030 Hb_025240_040 Hb_025240_040 Hb_155159_030--Hb_025240_040 Hb_155159_030--Hb_001579_220 Hb_127552_030--Hb_015934_070 Hb_127552_030--Hb_025240_040 Hb_000976_170 Hb_000976_170 Hb_127552_030--Hb_000976_170 Hb_127552_030--Hb_105123_010 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010 Hb_006907_130--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_006907_130--Hb_031862_100 Hb_002000_080 Hb_002000_080 Hb_006907_130--Hb_002000_080 Hb_001386_040 Hb_001386_040 Hb_006907_130--Hb_001386_040 Hb_002111_040 Hb_002111_040 Hb_006907_130--Hb_002111_040 Hb_000676_150 Hb_000676_150 Hb_005183_120--Hb_000676_150 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_000165_160 Hb_000165_160 Hb_005183_120--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_005183_120--Hb_001489_080 Hb_000783_020 Hb_000783_020 Hb_005183_120--Hb_000783_020 Hb_003599_040 Hb_003599_040 Hb_001006_190--Hb_003599_040 Hb_001421_060 Hb_001421_060 Hb_001006_190--Hb_001421_060 Hb_159809_020 Hb_159809_020 Hb_001006_190--Hb_159809_020 Hb_008900_010 Hb_008900_010 Hb_001006_190--Hb_008900_010 Hb_001662_150 Hb_001662_150 Hb_001006_190--Hb_001662_150 Hb_172426_040 Hb_172426_040 Hb_001006_190--Hb_172426_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90276 1.11156 1.27588 1.16726 1.82454 2.23192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44011 3.12555 2.98574 3.30908 2.21686

CAGE analysis