Hb_001006_190

Information

Type -
Description -
Location Contig1006: 240210-244262
Sequence    

Annotation

kegg
ID rcu:RCOM_0775790
description hypothetical protein
nr
ID XP_012072410.1
description PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L170
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04848 PE=4 SV=1
Gene Ontology
ID GO:0003723
description PREDICTED: uncharacterized protein LOC105634201

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00407: 240377-243955 , PASA_asmbl_00408: 243987-244205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_190 0.0 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
2 Hb_003599_040 0.0685204851 - - unnamed protein product [Vitis vinifera]
3 Hb_001421_060 0.0759104936 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
4 Hb_159809_020 0.0766269031 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_008900_010 0.0769376792 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
6 Hb_001662_150 0.0782355058 - - Scaffold attachment factor B1 [Medicago truncatula]
7 Hb_172426_040 0.0786039358 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
8 Hb_000103_090 0.0799105255 - - PREDICTED: protein RDM1 [Jatropha curcas]
9 Hb_003050_220 0.0814628807 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
10 Hb_000384_100 0.0821687441 - - hydrolase, putative [Ricinus communis]
11 Hb_033834_040 0.0835654855 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000327_190 0.0845901814 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
13 Hb_155159_030 0.0850048843 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
14 Hb_003918_010 0.0853768071 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
15 Hb_002061_040 0.0854042274 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
16 Hb_127552_030 0.085538368 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_006400_030 0.0856192388 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
18 Hb_000020_060 0.0861540343 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
19 Hb_001545_080 0.0866284442 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
20 Hb_032202_190 0.0874366408 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]

Gene co-expression network

sample Hb_001006_190 Hb_001006_190 Hb_003599_040 Hb_003599_040 Hb_001006_190--Hb_003599_040 Hb_001421_060 Hb_001421_060 Hb_001006_190--Hb_001421_060 Hb_159809_020 Hb_159809_020 Hb_001006_190--Hb_159809_020 Hb_008900_010 Hb_008900_010 Hb_001006_190--Hb_008900_010 Hb_001662_150 Hb_001662_150 Hb_001006_190--Hb_001662_150 Hb_172426_040 Hb_172426_040 Hb_001006_190--Hb_172426_040 Hb_002284_240 Hb_002284_240 Hb_003599_040--Hb_002284_240 Hb_003599_040--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_003599_040--Hb_000926_300 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_000007_100 Hb_000007_100 Hb_003599_040--Hb_000007_100 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_001758_100 Hb_001758_100 Hb_008900_010--Hb_001758_100 Hb_000120_470 Hb_000120_470 Hb_008900_010--Hb_000120_470 Hb_000504_140 Hb_000504_140 Hb_008900_010--Hb_000504_140 Hb_008900_010--Hb_002284_240 Hb_000146_070 Hb_000146_070 Hb_008900_010--Hb_000146_070 Hb_003918_010 Hb_003918_010 Hb_008900_010--Hb_003918_010 Hb_007163_070 Hb_007163_070 Hb_001662_150--Hb_007163_070 Hb_003226_140 Hb_003226_140 Hb_001662_150--Hb_003226_140 Hb_000329_200 Hb_000329_200 Hb_001662_150--Hb_000329_200 Hb_005697_060 Hb_005697_060 Hb_001662_150--Hb_005697_060 Hb_001157_020 Hb_001157_020 Hb_001662_150--Hb_001157_020 Hb_005306_170 Hb_005306_170 Hb_001662_150--Hb_005306_170 Hb_172426_040--Hb_003918_010 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2872 6.97611 7.80526 8.01721 10.4266 17.164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2475 24.1431 13.9331 15.9042 9.46293

CAGE analysis