Hb_159809_020

Information

Type -
Description -
Location Contig159809: 33155-44164
Sequence    

Annotation

kegg
ID rcu:RCOM_0937540
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002519085.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6NLY8
description HVA22-like protein k OS=Arabidopsis thaliana GN=HVA22K PE=2 SV=1
trembl
ID B9RZB6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0937540 PE=4 SV=1
Gene Ontology
ID GO:0004747
description pentatricopeptide repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14236: 32958-36146 , PASA_asmbl_14237: 36949-37117 , PASA_asmbl_14238: 37305-38129 , PASA_asmbl_14239: 40291-44071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159809_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_002963_010 0.0432295612 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
3 Hb_003599_040 0.0507787122 - - unnamed protein product [Vitis vinifera]
4 Hb_002284_240 0.050842987 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
5 Hb_000020_060 0.0589847385 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
6 Hb_010504_020 0.0630502554 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
7 Hb_000926_250 0.0639848512 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
8 Hb_000307_090 0.0641023129 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
9 Hb_005305_080 0.0653891168 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
10 Hb_033834_040 0.0665004873 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000058_060 0.0677919835 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
12 Hb_000574_480 0.0678339984 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
13 Hb_000059_370 0.067999397 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
14 Hb_000007_100 0.0692321024 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
15 Hb_012053_070 0.0693933442 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
16 Hb_002226_070 0.069429736 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
17 Hb_015807_040 0.0699444596 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
18 Hb_000103_090 0.0729902948 - - PREDICTED: protein RDM1 [Jatropha curcas]
19 Hb_000384_100 0.073282483 - - hydrolase, putative [Ricinus communis]
20 Hb_000656_400 0.0738144678 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]

Gene co-expression network

sample Hb_159809_020 Hb_159809_020 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_000834_270 Hb_000834_270 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_001722_100 Hb_001722_100 Hb_002963_010--Hb_001722_100 Hb_003599_040--Hb_002284_240 Hb_000926_300 Hb_000926_300 Hb_003599_040--Hb_000926_300 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_000007_100 Hb_000007_100 Hb_003599_040--Hb_000007_100 Hb_002284_240--Hb_000926_250 Hb_002284_240--Hb_000007_100 Hb_002284_240--Hb_000020_060 Hb_002284_240--Hb_000327_190 Hb_002995_020 Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_005305_080 Hb_005305_080 Hb_010504_020--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_010504_020--Hb_000510_130 Hb_020956_020 Hb_020956_020 Hb_010504_020--Hb_020956_020 Hb_002477_330 Hb_002477_330 Hb_010504_020--Hb_002477_330 Hb_000959_260 Hb_000959_260 Hb_010504_020--Hb_000959_260 Hb_000926_250--Hb_000007_100 Hb_033834_040 Hb_033834_040 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95505 4.03064 3.61405 4.72391 6.48148 8.59512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2534 13.8948 8.51184 5.32619 3.60061

CAGE analysis