Hb_000676_150

Information

Type -
Description -
Location Contig676: 98512-99075
Sequence    

Annotation

kegg
ID rcu:RCOM_0533460
description 50S ribosomal protein L7/L12, putative
nr
ID XP_002521510.1
description 50S ribosomal protein L7/L12, putative [Ricinus communis]
swissprot
ID P53163
description 54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1 SV=1
trembl
ID B9S691
description 50S ribosomal protein L7/L12, putative OS=Ricinus communis GN=RCOM_0533460 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 54s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53555: 98383-100504 , PASA_asmbl_53556: 99023-99180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_150 0.0 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
2 Hb_005183_120 0.071451004 - - protein translocase, putative [Ricinus communis]
3 Hb_034380_020 0.0909789342 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
4 Hb_000482_090 0.0958444109 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
5 Hb_011942_090 0.099878425 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X1 [Jatropha curcas]
6 Hb_000165_160 0.1006907273 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
7 Hb_127552_030 0.1031542441 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_000783_020 0.1034267566 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
9 Hb_000143_030 0.1040397606 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_001357_300 0.1041640441 - - PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001489_080 0.1049284856 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_004116_140 0.1052724016 - - nuclear transcription factor, X-box binding, putative [Ricinus communis]
13 Hb_000291_080 0.1066924764 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
14 Hb_000705_240 0.1083442408 - - DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis]
15 Hb_000985_030 0.1091608807 - - PREDICTED: RRP15-like protein [Populus euphratica]
16 Hb_001619_070 0.1093386281 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
17 Hb_003688_150 0.109583963 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
18 Hb_015934_070 0.1103843709 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
19 Hb_009113_070 0.1123525837 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
20 Hb_002111_040 0.1123643213 - - hypothetical protein JCGZ_16989 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_150 Hb_000676_150 Hb_005183_120 Hb_005183_120 Hb_000676_150--Hb_005183_120 Hb_034380_020 Hb_034380_020 Hb_000676_150--Hb_034380_020 Hb_000482_090 Hb_000482_090 Hb_000676_150--Hb_000482_090 Hb_011942_090 Hb_011942_090 Hb_000676_150--Hb_011942_090 Hb_000165_160 Hb_000165_160 Hb_000676_150--Hb_000165_160 Hb_127552_030 Hb_127552_030 Hb_000676_150--Hb_127552_030 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_005183_120--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_005183_120--Hb_001489_080 Hb_001545_080 Hb_001545_080 Hb_005183_120--Hb_001545_080 Hb_000783_020 Hb_000783_020 Hb_005183_120--Hb_000783_020 Hb_005551_040 Hb_005551_040 Hb_034380_020--Hb_005551_040 Hb_004889_010 Hb_004889_010 Hb_034380_020--Hb_004889_010 Hb_034380_020--Hb_001489_080 Hb_002014_020 Hb_002014_020 Hb_034380_020--Hb_002014_020 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_003697_040 Hb_003697_040 Hb_034380_020--Hb_003697_040 Hb_002005_020 Hb_002005_020 Hb_000482_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000482_090--Hb_004218_110 Hb_001959_210 Hb_001959_210 Hb_000482_090--Hb_001959_210 Hb_002759_060 Hb_002759_060 Hb_000482_090--Hb_002759_060 Hb_004254_120 Hb_004254_120 Hb_000482_090--Hb_004254_120 Hb_172932_010 Hb_172932_010 Hb_000482_090--Hb_172932_010 Hb_000291_080 Hb_000291_080 Hb_011942_090--Hb_000291_080 Hb_001414_030 Hb_001414_030 Hb_011942_090--Hb_001414_030 Hb_000820_090 Hb_000820_090 Hb_011942_090--Hb_000820_090 Hb_006420_100 Hb_006420_100 Hb_011942_090--Hb_006420_100 Hb_002111_040 Hb_002111_040 Hb_011942_090--Hb_002111_040 Hb_002799_070 Hb_002799_070 Hb_000165_160--Hb_002799_070 Hb_001507_040 Hb_001507_040 Hb_000165_160--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_000165_160--Hb_000445_040 Hb_000165_160--Hb_000783_020 Hb_000334_150 Hb_000334_150 Hb_000165_160--Hb_000334_150 Hb_155159_030 Hb_155159_030 Hb_127552_030--Hb_155159_030 Hb_015934_070 Hb_015934_070 Hb_127552_030--Hb_015934_070 Hb_025240_040 Hb_025240_040 Hb_127552_030--Hb_025240_040 Hb_000976_170 Hb_000976_170 Hb_127552_030--Hb_000976_170 Hb_105123_010 Hb_105123_010 Hb_127552_030--Hb_105123_010 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.60225 2.86273 9.16988 8.27853 9.55662 13.0144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3 17.2503 26.1073 18.8678 14.3485

CAGE analysis