Hb_000291_080

Information

Type -
Description -
Location Contig291: 64278-70475
Sequence    

Annotation

kegg
ID rcu:RCOM_1033030
description Vacuolar protein sorting-associated protein VPS9, putative
nr
ID XP_002513841.1
description Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
swissprot
ID Q9LT31
description Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1
trembl
ID B9RJC2
description Vacuolar protein sorting-associated protein VPS9, putative OS=Ricinus communis GN=RCOM_1033030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30499: 66353-70199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_080 0.0 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
2 Hb_001390_130 0.060965013 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
3 Hb_002111_040 0.0619482746 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
4 Hb_000820_090 0.0680805694 - - -
5 Hb_003697_040 0.0731501529 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
6 Hb_004696_080 0.0757465568 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
7 Hb_000363_360 0.0778470195 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
8 Hb_005488_200 0.078308914 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
9 Hb_005305_110 0.0831426614 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
10 Hb_004126_070 0.0838442668 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
11 Hb_000477_060 0.085795215 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_019654_030 0.0867380774 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
13 Hb_000538_070 0.0873475373 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
14 Hb_000108_190 0.0895853883 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
15 Hb_086639_030 0.092090278 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_000023_090 0.0926624789 - - mak, putative [Ricinus communis]
17 Hb_000016_160 0.0930702568 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
18 Hb_000985_060 0.0937494863 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
19 Hb_000841_020 0.0938136369 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
20 Hb_002014_020 0.093921857 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000291_080 Hb_000291_080 Hb_001390_130 Hb_001390_130 Hb_000291_080--Hb_001390_130 Hb_002111_040 Hb_002111_040 Hb_000291_080--Hb_002111_040 Hb_000820_090 Hb_000820_090 Hb_000291_080--Hb_000820_090 Hb_003697_040 Hb_003697_040 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360 Hb_001390_130--Hb_002111_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_031862_100 Hb_031862_100 Hb_002111_040--Hb_031862_100 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_000820_090--Hb_005488_200 Hb_008232_010 Hb_008232_010 Hb_000820_090--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000820_090--Hb_000982_080 Hb_000820_090--Hb_002111_040 Hb_004672_010 Hb_004672_010 Hb_000820_090--Hb_004672_010 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_024439_010 Hb_024439_010 Hb_004696_080--Hb_024439_010 Hb_000638_250 Hb_000638_250 Hb_004696_080--Hb_000638_250 Hb_152784_010 Hb_152784_010 Hb_004696_080--Hb_152784_010 Hb_000805_240 Hb_000805_240 Hb_004696_080--Hb_000805_240 Hb_148121_040 Hb_148121_040 Hb_004696_080--Hb_148121_040 Hb_000363_360--Hb_000477_060 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20678 1.67616 2.88907 5.65193 4.1928 4.07028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64599 8.31703 9.32857 5.96901 3.67087

CAGE analysis