Hb_000638_250

Information

Type -
Description -
Location Contig638: 180115-194900
Sequence    

Annotation

kegg
ID rcu:RCOM_1449100
description WD-repeat protein, putative
nr
ID XP_002512961.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q6DKP5
description WD repeat-containing protein 13 OS=Pan troglodytes GN=WDR13 PE=3 SV=1
trembl
ID B9RHA2
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1449100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52036: 180299-180814 , PASA_asmbl_52037: 180842-194936 , PASA_asmbl_52038: 182522-182791 , PASA_asmbl_52040: 190292-190609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_250 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_152784_010 0.0603493151 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
3 Hb_000103_320 0.0634496334 - - Stem-specific protein TSJT1, putative [Ricinus communis]
4 Hb_000261_140 0.0644649644 - - -
5 Hb_007044_120 0.0662758692 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
6 Hb_006831_120 0.0675412696 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
7 Hb_004696_080 0.0692365947 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
8 Hb_158467_010 0.070077403 - - transporter, putative [Ricinus communis]
9 Hb_004109_170 0.0701597659 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_000086_280 0.0739497968 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
11 Hb_148121_040 0.0742628086 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
12 Hb_000102_020 0.0772097681 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
13 Hb_000403_060 0.0782851801 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
14 Hb_004889_010 0.07951352 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
15 Hb_001123_130 0.0813072562 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000340_570 0.0815048301 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
17 Hb_000240_090 0.0815132852 - - Rab5 [Hevea brasiliensis]
18 Hb_002995_020 0.0821674047 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
19 Hb_004635_100 0.0828298252 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
20 Hb_021596_090 0.0829588528 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]

Gene co-expression network

sample Hb_000638_250 Hb_000638_250 Hb_152784_010 Hb_152784_010 Hb_000638_250--Hb_152784_010 Hb_000103_320 Hb_000103_320 Hb_000638_250--Hb_000103_320 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_152784_010--Hb_000103_320 Hb_152784_010--Hb_004696_080 Hb_000103_320--Hb_006831_120 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_000103_320--Hb_001318_250 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_010175_040 Hb_010175_040 Hb_000261_140--Hb_010175_040 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000920_110 Hb_000920_110 Hb_000261_140--Hb_000920_110 Hb_001484_070 Hb_001484_070 Hb_000261_140--Hb_001484_070 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150 Hb_021596_090 Hb_021596_090 Hb_007044_120--Hb_021596_090 Hb_000403_060 Hb_000403_060 Hb_007044_120--Hb_000403_060 Hb_148121_040 Hb_148121_040 Hb_007044_120--Hb_148121_040 Hb_000175_340 Hb_000175_340 Hb_007044_120--Hb_000175_340 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_024439_010 Hb_024439_010 Hb_004696_080--Hb_024439_010 Hb_000805_240 Hb_000805_240 Hb_004696_080--Hb_000805_240 Hb_004696_080--Hb_148121_040 Hb_000291_080 Hb_000291_080 Hb_004696_080--Hb_000291_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36776 4.48296 8.37869 9.63092 6.73174 8.36276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6435 16.9297 16.7503 6.48911 4.75232

CAGE analysis