Hb_033594_150

Information

Type -
Description -
Location Contig33594: 105697-113534
Sequence    

Annotation

kegg
ID mtr:MTR_5g015370
description ADP-RIBOSYLATION FACTOR-like protein
nr
ID AFK33949.1
description unknown [Lotus japonicus]
swissprot
ID Q5ZKQ8
description ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1
trembl
ID I3S107
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 8a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35147: 105726-111234 , PASA_asmbl_35148: 107122-111251
cDNA
(Sanger)
(ID:Location)		 008_C06.ab1: 105823-111194 , 036_F13.ab1: 105791-111192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_150 0.0 - - unknown [Lotus japonicus]
2 Hb_152784_010 0.0668747491 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
3 Hb_000221_160 0.0723573264 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
4 Hb_000985_060 0.0792239876 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
5 Hb_029388_030 0.0800447657 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
6 Hb_010042_010 0.0805474216 - - Urease accessory protein ureD, putative [Ricinus communis]
7 Hb_018124_010 0.0817308873 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
8 Hb_000103_320 0.0854011957 - - Stem-specific protein TSJT1, putative [Ricinus communis]
9 Hb_001105_070 0.0857774685 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
10 Hb_000638_250 0.0861148729 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000479_190 0.0862934203 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000363_360 0.088211609 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
13 Hb_000102_020 0.0889597235 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
14 Hb_158467_010 0.0894712596 - - transporter, putative [Ricinus communis]
15 Hb_000270_370 0.0905301244 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
16 Hb_000934_250 0.0914170586 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
17 Hb_001461_010 0.0916924651 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
18 Hb_143766_010 0.0922990827 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
19 Hb_001700_030 0.0924341539 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
20 Hb_065525_020 0.0924660192 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_033594_150 Hb_033594_150 Hb_152784_010 Hb_152784_010 Hb_033594_150--Hb_152784_010 Hb_000221_160 Hb_000221_160 Hb_033594_150--Hb_000221_160 Hb_000985_060 Hb_000985_060 Hb_033594_150--Hb_000985_060 Hb_029388_030 Hb_029388_030 Hb_033594_150--Hb_029388_030 Hb_010042_010 Hb_010042_010 Hb_033594_150--Hb_010042_010 Hb_018124_010 Hb_018124_010 Hb_033594_150--Hb_018124_010 Hb_000638_250 Hb_000638_250 Hb_152784_010--Hb_000638_250 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_000103_320 Hb_000103_320 Hb_152784_010--Hb_000103_320 Hb_004696_080 Hb_004696_080 Hb_152784_010--Hb_004696_080 Hb_003918_010 Hb_003918_010 Hb_000221_160--Hb_003918_010 Hb_012053_070 Hb_012053_070 Hb_000221_160--Hb_012053_070 Hb_000270_370 Hb_000270_370 Hb_000221_160--Hb_000270_370 Hb_000363_360 Hb_000363_360 Hb_000221_160--Hb_000363_360 Hb_000331_200 Hb_000331_200 Hb_000221_160--Hb_000331_200 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000479_190 Hb_000479_190 Hb_000985_060--Hb_000479_190 Hb_114310_080 Hb_114310_080 Hb_000985_060--Hb_114310_080 Hb_000985_060--Hb_000363_360 Hb_028515_010 Hb_028515_010 Hb_000985_060--Hb_028515_010 Hb_000985_060--Hb_029388_030 Hb_003671_020 Hb_003671_020 Hb_029388_030--Hb_003671_020 Hb_029388_030--Hb_114310_080 Hb_029388_030--Hb_000479_190 Hb_029388_030--Hb_152784_010 Hb_015807_040 Hb_015807_040 Hb_010042_010--Hb_015807_040 Hb_000331_450 Hb_000331_450 Hb_010042_010--Hb_000331_450 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_065525_020 Hb_065525_020 Hb_010042_010--Hb_065525_020 Hb_000934_250 Hb_000934_250 Hb_010042_010--Hb_000934_250 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010 Hb_004767_080 Hb_004767_080 Hb_018124_010--Hb_004767_080 Hb_143766_010 Hb_143766_010 Hb_018124_010--Hb_143766_010 Hb_003787_010 Hb_003787_010 Hb_018124_010--Hb_003787_010 Hb_004052_050 Hb_004052_050 Hb_018124_010--Hb_004052_050 Hb_000417_360 Hb_000417_360 Hb_018124_010--Hb_000417_360 Hb_000701_100 Hb_000701_100 Hb_018124_010--Hb_000701_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.3904 12.9503 23.5615 57.178 29.7866 34.0556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.3372 79.267 64.6969 31.1825 15.0337

CAGE analysis