Hb_004052_050

Information

Type -
Description -
Location Contig4052: 61179-61574
Sequence    

Annotation

kegg
ID rcu:RCOM_1469480
description hypothetical protein
nr
ID XP_012080395.1
description PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11736 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105640640

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40183: 61117-63676
cDNA
(Sanger)
(ID:Location)		 003_G23.ab1: 61122-63335 , 035_N13.ab1: 61117-63365

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_050 0.0 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
2 Hb_009486_020 0.0761136608 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
3 Hb_018124_010 0.0791152533 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
4 Hb_000805_240 0.0816815168 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
5 Hb_001247_100 0.0836453631 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
6 Hb_152784_010 0.0869521211 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
7 Hb_007192_100 0.0912918303 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
8 Hb_010175_040 0.0924708395 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
9 Hb_000111_330 0.0925585847 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
10 Hb_000327_380 0.092957467 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
11 Hb_000261_140 0.0930094614 - - -
12 Hb_000701_100 0.0932154797 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
13 Hb_011609_020 0.0936143353 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000005_080 0.0954407927 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
15 Hb_000340_570 0.0979760933 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
16 Hb_000417_360 0.0982991572 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
17 Hb_000103_320 0.098771393 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_116608_010 0.1001432621 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
19 Hb_000638_250 0.1005620741 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_021068_040 0.1012354499 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004052_050 Hb_004052_050 Hb_009486_020 Hb_009486_020 Hb_004052_050--Hb_009486_020 Hb_018124_010 Hb_018124_010 Hb_004052_050--Hb_018124_010 Hb_000805_240 Hb_000805_240 Hb_004052_050--Hb_000805_240 Hb_001247_100 Hb_001247_100 Hb_004052_050--Hb_001247_100 Hb_152784_010 Hb_152784_010 Hb_004052_050--Hb_152784_010 Hb_007192_100 Hb_007192_100 Hb_004052_050--Hb_007192_100 Hb_000638_170 Hb_000638_170 Hb_009486_020--Hb_000638_170 Hb_148121_040 Hb_148121_040 Hb_009486_020--Hb_148121_040 Hb_009486_020--Hb_000805_240 Hb_114310_080 Hb_114310_080 Hb_009486_020--Hb_114310_080 Hb_006831_120 Hb_006831_120 Hb_009486_020--Hb_006831_120 Hb_004767_080 Hb_004767_080 Hb_018124_010--Hb_004767_080 Hb_143766_010 Hb_143766_010 Hb_018124_010--Hb_143766_010 Hb_003787_010 Hb_003787_010 Hb_018124_010--Hb_003787_010 Hb_000417_360 Hb_000417_360 Hb_018124_010--Hb_000417_360 Hb_000701_100 Hb_000701_100 Hb_018124_010--Hb_000701_100 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_004696_080 Hb_004696_080 Hb_000805_240--Hb_004696_080 Hb_000805_240--Hb_152784_010 Hb_000987_070 Hb_000987_070 Hb_001247_100--Hb_000987_070 Hb_003502_060 Hb_003502_060 Hb_001247_100--Hb_003502_060 Hb_000005_080 Hb_000005_080 Hb_001247_100--Hb_000005_080 Hb_001247_100--Hb_021068_040 Hb_030736_080 Hb_030736_080 Hb_001247_100--Hb_030736_080 Hb_000638_250 Hb_000638_250 Hb_152784_010--Hb_000638_250 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_000103_320 Hb_000103_320 Hb_152784_010--Hb_000103_320 Hb_152784_010--Hb_004696_080 Hb_001172_120 Hb_001172_120 Hb_007192_100--Hb_001172_120 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_007192_100--Hb_000115_230 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
164.765 167.786 163.171 288.055 112.863 125.88
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
433.172 481.491 357.227 153.756 87.7734

CAGE analysis