Hb_015807_100

Information

Type transcription factor
Description TF Family: bHLH
Location Contig15807: 104474-107833
Sequence    

Annotation

kegg
ID rcu:RCOM_0181650
description DNA binding protein, putative
nr
ID XP_002522828.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FH37
description Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1
trembl
ID B9SA09
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0181650 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor ilr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13901: 104243-107909 , PASA_asmbl_13902: 106822-107169
cDNA
(Sanger)
(ID:Location)		 028_F09.ab1: 104609-107862 , 044_J13.ab1: 104543-107862 , 052_I13.ab1: 104505-107830

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_100 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_000115_230 0.0763246358 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_007192_100 0.0786654868 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
4 Hb_000450_130 0.0804676561 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
5 Hb_000349_290 0.089301792 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
6 Hb_001172_120 0.0911418861 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
7 Hb_029904_030 0.091448455 - - aspartate aminotransferase, putative [Ricinus communis]
8 Hb_061195_020 0.0936141255 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
9 Hb_152910_020 0.094670642 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
10 Hb_006478_160 0.0946794116 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
11 Hb_001633_030 0.0960221014 - - -
12 Hb_002006_130 0.097499605 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
13 Hb_001565_080 0.0991222182 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
14 Hb_000417_360 0.099357872 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
15 Hb_002798_050 0.0996260362 - - l-allo-threonine aldolase, putative [Ricinus communis]
16 Hb_000363_480 0.0997532161 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
17 Hb_000215_060 0.1023084506 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
18 Hb_011173_050 0.1032068677 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
19 Hb_007304_070 0.1043964 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
20 Hb_000069_700 0.1054112445 - - hypothetical protein B456_005G003200 [Gossypium raimondii]

Gene co-expression network

sample Hb_015807_100 Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_015807_100--Hb_000115_230 Hb_007192_100 Hb_007192_100 Hb_015807_100--Hb_007192_100 Hb_000450_130 Hb_000450_130 Hb_015807_100--Hb_000450_130 Hb_000349_290 Hb_000349_290 Hb_015807_100--Hb_000349_290 Hb_001172_120 Hb_001172_120 Hb_015807_100--Hb_001172_120 Hb_029904_030 Hb_029904_030 Hb_015807_100--Hb_029904_030 Hb_000239_030 Hb_000239_030 Hb_000115_230--Hb_000239_030 Hb_000115_230--Hb_001172_120 Hb_000115_230--Hb_007192_100 Hb_002374_390 Hb_002374_390 Hb_000115_230--Hb_002374_390 Hb_000392_380 Hb_000392_380 Hb_000115_230--Hb_000392_380 Hb_007192_100--Hb_001172_120 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_000363_480 Hb_000363_480 Hb_000450_130--Hb_000363_480 Hb_008921_020 Hb_008921_020 Hb_000450_130--Hb_008921_020 Hb_000417_360 Hb_000417_360 Hb_000450_130--Hb_000417_360 Hb_006478_160 Hb_006478_160 Hb_000450_130--Hb_006478_160 Hb_004223_040 Hb_004223_040 Hb_000450_130--Hb_004223_040 Hb_001565_080 Hb_001565_080 Hb_000349_290--Hb_001565_080 Hb_003185_050 Hb_003185_050 Hb_000349_290--Hb_003185_050 Hb_000215_060 Hb_000215_060 Hb_000349_290--Hb_000215_060 Hb_000349_290--Hb_000363_480 Hb_000905_180 Hb_000905_180 Hb_000349_290--Hb_000905_180 Hb_011173_050 Hb_011173_050 Hb_000349_290--Hb_011173_050 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_001235_110 Hb_001235_110 Hb_001172_120--Hb_001235_110 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040 Hb_000111_330 Hb_000111_330 Hb_029904_030--Hb_000111_330 Hb_002798_050 Hb_002798_050 Hb_029904_030--Hb_002798_050 Hb_000684_270 Hb_000684_270 Hb_029904_030--Hb_000684_270 Hb_004871_020 Hb_004871_020 Hb_029904_030--Hb_004871_020 Hb_001633_030 Hb_001633_030 Hb_029904_030--Hb_001633_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.367 133.305 79.0085 135.759 52.7254 83.4449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
274.621 476.733 230.179 106.258 64.728

CAGE analysis