Hb_002798_050

Information

Type -
Description -
Location Contig2798: 46975-51764
Sequence    

Annotation

kegg
ID rcu:RCOM_0609060
description l-allo-threonine aldolase, putative (EC:4.1.2.5)
nr
ID XP_002521974.1
description l-allo-threonine aldolase, putative [Ricinus communis]
swissprot
ID Q8RXU4
description Probable low-specificity L-threonine aldolase 1 OS=Arabidopsis thaliana GN=THA1 PE=1 SV=1
trembl
ID B9S7K5
description L-allo-threonine aldolase, putative OS=Ricinus communis GN=RCOM_0609060 PE=4 SV=1
Gene Ontology
ID GO:0016829
description probable low-specificity l-threonine aldolase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29141: 46939-51753 , PASA_asmbl_29142: 47238-51729 , PASA_asmbl_29143: 47163-47764
cDNA
(Sanger)
(ID:Location)		 042_G03.ab1: 46949-47615

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002798_050 0.0 - - l-allo-threonine aldolase, putative [Ricinus communis]
2 Hb_000111_330 0.0868005681 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
3 Hb_029904_030 0.0873448621 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_029866_060 0.0962995092 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
5 Hb_015807_100 0.0996260362 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_011173_050 0.1010891499 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
7 Hb_001633_030 0.1022922922 - - -
8 Hb_000905_200 0.1038678702 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
9 Hb_021409_160 0.1040184868 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
10 Hb_000349_290 0.1108866315 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
11 Hb_000347_410 0.1111686338 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
12 Hb_000027_150 0.1116577387 - - mitochondrial carrier protein, putative [Ricinus communis]
13 Hb_003656_070 0.1136522795 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
14 Hb_004052_050 0.1137301002 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
15 Hb_002909_070 0.1143828945 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
16 Hb_005431_010 0.1181626467 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
17 Hb_144598_020 0.1199403964 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
18 Hb_000363_480 0.120361856 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
19 Hb_003106_050 0.1205539618 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
20 Hb_001047_230 0.1207571836 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002798_050 Hb_002798_050 Hb_000111_330 Hb_000111_330 Hb_002798_050--Hb_000111_330 Hb_029904_030 Hb_029904_030 Hb_002798_050--Hb_029904_030 Hb_029866_060 Hb_029866_060 Hb_002798_050--Hb_029866_060 Hb_015807_100 Hb_015807_100 Hb_002798_050--Hb_015807_100 Hb_011173_050 Hb_011173_050 Hb_002798_050--Hb_011173_050 Hb_001633_030 Hb_001633_030 Hb_002798_050--Hb_001633_030 Hb_003656_070 Hb_003656_070 Hb_000111_330--Hb_003656_070 Hb_000574_480 Hb_000574_480 Hb_000111_330--Hb_000574_480 Hb_000111_330--Hb_029866_060 Hb_000111_330--Hb_011173_050 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_129204_030 Hb_129204_030 Hb_000111_330--Hb_129204_030 Hb_029904_030--Hb_000111_330 Hb_029904_030--Hb_015807_100 Hb_000684_270 Hb_000684_270 Hb_029904_030--Hb_000684_270 Hb_004871_020 Hb_004871_020 Hb_029904_030--Hb_004871_020 Hb_029904_030--Hb_001633_030 Hb_029866_060--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_029866_060--Hb_008173_090 Hb_002284_010 Hb_002284_010 Hb_029866_060--Hb_002284_010 Hb_002163_020 Hb_002163_020 Hb_029866_060--Hb_002163_020 Hb_029866_060--Hb_129204_030 Hb_000115_230 Hb_000115_230 Hb_015807_100--Hb_000115_230 Hb_007192_100 Hb_007192_100 Hb_015807_100--Hb_007192_100 Hb_000450_130 Hb_000450_130 Hb_015807_100--Hb_000450_130 Hb_000349_290 Hb_000349_290 Hb_015807_100--Hb_000349_290 Hb_001172_120 Hb_001172_120 Hb_015807_100--Hb_001172_120 Hb_005568_120 Hb_005568_120 Hb_011173_050--Hb_005568_120 Hb_000175_060 Hb_000175_060 Hb_011173_050--Hb_000175_060 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_000215_060 Hb_000215_060 Hb_011173_050--Hb_000215_060 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130 Hb_007304_070 Hb_007304_070 Hb_001633_030--Hb_007304_070 Hb_000181_300 Hb_000181_300 Hb_001633_030--Hb_000181_300 Hb_002431_050 Hb_002431_050 Hb_001633_030--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_001633_030--Hb_010672_060 Hb_153112_030 Hb_153112_030 Hb_001633_030--Hb_153112_030 Hb_004459_040 Hb_004459_040 Hb_001633_030--Hb_004459_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3058 34.2113 14.1055 31.4432 18.9037 21.9522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.8685 97.0617 67.3947 12.9656 13.9409

CAGE analysis